Deep sequencing reads for mature sequence MIMAT0003729

Stem-loop ID mmu-mir-216b
Mature ID mmu-miR-216b-5p
Reads 
            mmu-miR-216b-5p                         mmu-miR-216b-3p                      Count     RPM (mean number of reads per million)
.............AAAUCUCUGCAGGCAAAUGUGA...................................................  6115      77.3
.............AAAUCUCUGCAGGCAAAUGUG....................................................  2773      34
.............AAAUCUCUGCAGGCAAAUGU.....................................................  1392      14.5
.............AAAUCUCUGCAGGCAAAUGUGAU..................................................  320       3.28
.............AAAUCUCUGCAGGCAAAUG......................................................  149       1.47
.............AAAUCUCUGCAGGCAAAUGUGAUG.................................................  26        0.275
.............AAAUCUCUGCAGGCAAAUGUGAUGU................................................  9         0.131
.............AAAUCUCUGCAGGCAAAU.......................................................  1         0.00583
.............AAAUCUCUGCAGGCAAA........................................................  1         0.0316
..............AAUCUCUGCAGGCAAAUGUGA...................................................  12        0.223
..............AAUCUCUGCAGGCAAAUGUG....................................................  3         0.0832
..............AAUCUCUGCAGGCAAAUGU.....................................................  3         0.201
..............AAUCUCUGCAGGCAAAUGUGAUGUC...............................................  1         0.00974
..............AAUCUCUGCAGGCAAAUGUGAUG.................................................  1         0.00974
..............AAUCUCUGCAGGCAAAUGUGAU..................................................  1         0.00974
...............AUCUCUGCAGGCAAAUGUGAU..................................................  2         0.0195
...............AUCUCUGCAGGCAAAUGUGA...................................................  1         0.0316
...............AUCUCUGCAGGCAAAUGUGAUGU................................................  1         0.00974
..................UCUGCAGGCAAAUGUGA...................................................  2         0.0294
....................................................CACACUUACCUGUAGAGAUUCU............  2         0.0195
.....................................................ACACUUACCUGUAGAGAUUCUU...........  27        0.304
.....................................................ACACUUACCUGUAGAGAUUCU............  10        0.0974
.....................................................ACACUUACCUGUAGAGAUUC.............  3         0.0292
......................................................CACUUACCUGUAGAGAUUCUU...........  1         0.0258
.........................................................UUACCUGUAGAGAUUCUU...........  1         0.037
UUGGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAACCACACACUUACCUGUAGAGAUUCUUCAGUCUGACAA
.((.((((((((..((((((((((((.((.((((...((......)).....)))).)).))))))))))))..)))))))).)). (-37.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000037 22brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 16brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 4brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 119brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 3whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 4whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 3whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 2whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 20whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 21whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 27whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 28whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 25whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 14whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 23whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 104whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 35embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 194embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 248embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 32embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 3embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000063 1embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000222 1spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000226 1spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000231 1bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000244 6spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000248 1 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 17brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000254 10118pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000258 2testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 5ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).