Deep sequencing reads for mature sequence MIMAT0003230

Stem-loop ID hsa-mir-566
Mature ID hsa-miR-566
Reads 
                hsa-miR-566                                                                    Count     RPM (mean number of reads per million)
.......................................................................GGGAGGCGAAGGUUGCAGUGAG.  1         1.71
GCUAGGCGUGGUGGCGGGCGCCUGUGAUCCCAACUACUCAGGAGGCUGGGGCAGCAGAAUCGCUUGAACCCGGGAGGCGAAGGUUGCAGUGAGC
(((...((.(((..((((((.((((..(((((.((.(....).)).)))))..))))...)))))).))))).(..((....))..)....))) (-30.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 11embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 2embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 9melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000108 2melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000110 2melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000139 1 GEO : GSM532875 normal cervix [ Witten D et al.]
ER0000000140 2squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000148 1squamous cell GEO : GSM532884 [ Witten D et al.]
ER0000000150 2squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000151 1 GEO : GSM532887 normal cervix [ Witten D et al.]
ER0000000156 5squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000157 15 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000158 8squamous cell GEO : GSM532894 [ Witten D et al.]
ER0000000159 2 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000160 1squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000162 1squamous cell GEO : GSM532898 [ Witten D et al.]
ER0000000163 1 GEO : GSM532899 normal cervix [ Witten D et al.]
ER0000000164 5squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000166 3squamous cell GEO : GSM532902 [ Witten D et al.]
ER0000000168 6adenosquamous cell GEO : GSM532904 [ Witten D et al.]
ER0000000169 1 GEO : GSM532905 normal cervix [ Witten D et al.]
ER0000000174 2squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000176 2adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000177 4 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000178 3squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 8squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000183 3whole body GEO : GSM532919 normal cervix [ Witten D et al.]
ER0000000184 3squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000186 1squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000188 1squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000266 1 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
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by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).