Deep sequencing reads for mature sequence MIMAT0003145

Stem-loop ID

ppt-MIR537a

Mature ID

ppt-miR537a

Reads

                                                                                                                                                            ppt-miR537a                        Count     RPM (mean number of reads per million)
..............UGGACUGUAGAAACACCUGAAG..........................................................................................................................................................  1         3.98
...............GGACUGUAGAAACACCUGAAGC.........................................................................................................................................................  1         3.98
................GACUGUAGAAACACCUGAAGC.........................................................................................................................................................  231       926
................GACUGUAGAAACACCUGA............................................................................................................................................................  46        179
................GACUGUAGAAACACCUGAAG..........................................................................................................................................................  25        95.8
................GACUGUAGAAACACCUGAA...........................................................................................................................................................  12        46.3
................GACUGUAGAAACACCUGAAGCG........................................................................................................................................................  2         19.3
................GACUGUAGAAACACCUG.............................................................................................................................................................  1         3.98
..................CUGUAGAAACACCUGAAGC.........................................................................................................................................................  3         11.2
...................UGUAGAAACACCUGAAGC.........................................................................................................................................................  4         39.3
...................UGUAGAAACACCUGAAG..........................................................................................................................................................  1         3.98
..................................................................................................................................................UCAAACUCUUGAGGUGUUUCU.......................  3         10.4
........................................................................................................................................................UCUUGAGGUGUUUCUACAGGCU................  2         19.3
.........................................................................................................................................................CUUGAGGUGUUUCUACAGGCU................  4         15.9
.........................................................................................................................................................CUUGAGGUGUUUCUACAGGCUA...............  3         10.4
..........................................................................................................................................................UUGAGGUGUUUCUACAGGCUA...............  1263      4.79e+03
..........................................................................................................................................................UUGAGGUGUUUCUACAGGCU................  170       639
..........................................................................................................................................................UUGAGGUGUUUCUACAG...................  14        66.3
..........................................................................................................................................................UUGAGGUGUUUCUACAGGC.................  12        42.5
..........................................................................................................................................................UUGAGGUGUUUCUACAGG..................  6         20.1
..........................................................................................................................................................UUGAGGUGUUUCUACAGGCUAC..............  4         13.7
..........................................................................................................................................................UUGAGGUGUUUCUACAGGCUACAU............  1         3.23
...........................................................................................................................................................UGAGGUGUUUCUACAGGCUA...............  95        339
...........................................................................................................................................................UGAGGUGUUUCUACAGGCU................  28        104
...........................................................................................................................................................UGAGGUGUUUCUACAGGCUAC..............  1         3.23
...........................................................................................................................................................UGAGGUGUUUCUACAGGC.................  1         3.23
.............................................................................................................................................................AGGUGUUUCUACAGGCU................  4         26.5
.............................................................................................................................................................AGGUGUUUCUACAGGCUA...............  1         3.98
GUUGUCGUCAUAUAUGGACUGUAGAAACACCUGAAGCGAGUGAGGACCAUCCGAUUCUAGCCAUGGAAACAGAUAAGAGCUCAUGUCUGGGUUCCUGUUUCUGUGAUGCUUUUGAGGUUUGCGCAUGAGAUAGCAUCGGUUAGGCUUCAAACUCUUGAGGUGUUUCUACAGGCUACAUAUGAUUGAUAGC
(((((((((((((.(((.((((((((((((((.(((.(..(((((.((..(((((.(((..(((((((((((....(((((((....))))))))))))))))))...(((.((.(.....).)).))).))).)))))...)))))))..).))).)))))))))))))).))).)))))).))))))) (-80.60)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	72	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	1024	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	1607	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).