Deep sequencing reads for mature sequence MIMAT0002814

Stem-loop ID hsa-mir-432
Mature ID hsa-miR-432-5p
Reads 
             hsa-miR-432-5p                                 hsa-miR-432-3p                      Count     RPM (mean number of reads per million)
.............UCUUGGAGUAGGUCAUUGGGUGG..........................................................  501       18.2
.............UCUUGGAGUAGGUCAUUGGGUG...........................................................  350       12.8
.............UCUUGGAGUAGGUCAUUGGGU............................................................  305       11.3
.............UCUUGGAGUAGGUCAUUGGG.............................................................  59        2.25
.............UCUUGGAGUAGGUCAUUGGGUGGA.........................................................  20        0.72
.............UCUUGGAGUAGGUCAUUGG..............................................................  11        0.396
.............UCUUGGAGUAGGUCAUUGGGUGGAU........................................................  4         0.144
.............UCUUGGAGUAGGUCAUUG...............................................................  1         199
...............UUGGAGUAGGUCAUUGGGUGGAU........................................................  2         0.072
UGACUCCUCCAGGUCUUGGAGUAGGUCAUUGGGUGGAUCCUCUAUUUCCUUACGUGGGCCACUGGAUGGCUCCUCCAUGUCUUGGAGUAGAUCA
.((((.(((((((.(.(((((..(((((((.(((((.(((.(((......)).).)))))))).))))))).))))).).))))))).)).)). (-42.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000104 19melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 1964 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000140 2squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000156 2squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000160 1squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000164 3squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000174 1squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000180 2squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000188 2squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000194 1squamous cell GEO : GSM532930 [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).