miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0001481
Stem-loop ID	ame-mir-277
Mature ID	ame-miR-277
Reads	ame-miR-277 Count RPM (mean number of reads per million) .............CGUGCCAGAUGCGCGUUUACACGGGC............................................. 5 4.53 .............CGUGCCAGAUGCGCGUUUACACGG............................................... 4 3.63 .............CGUGCCAGAUGCGCGUUUACA.................................................. 3 2.72 .............CGUGCCAGAUGCGCGUUUACACG................................................ 1 0.907 .............CGUGCCAGAUGCGCGUUUAC................................................... 1 0.907 .................CCAGAUGCGCGUUUACACGG............................................... 1 0.907 ................................CACGGGCCCUGAAUACUGUA................................ 1 0.907 ..................................CGGGCCCUGAAUACUGUAAAUGCACUAUCUGGUA................ 1 0.907 ...................................GGGCCCUGAAUACUGUAAAUGCACUAUCUGGUAC............... 1 0.907 .....................................GCCCUGAAUACUGUAAAUGCACUAUC..................... 1 0.907 ......................................CCCUGAAUACUGUAAAUGC........................... 1 0.907 ............................................AUACUGUAAAUGCACUAUC..................... 1 0.907 ..............................................ACUGUAAAUGCACUAUCUGGUACGA............. 3 2.72 ..............................................ACUGUAAAUGCACUAUCUGGUACG.............. 2 1.81 ..............................................ACUGUAAAUGCACUAUCUGGU................. 1 0.907 ...............................................CUGUAAAUGCACUAUCUGGUACGA............. 7 6.35 ...............................................CUGUAAAUGCACUAUCUGG.................. 6 5.44 ...............................................CUGUAAAUGCACUAUCUGGUA................ 3 2.72 ...............................................CUGUAAAUGCACUAUCUGGUAC............... 2 1.81 ...............................................CUGUAAAUGCACUAUCUGGUACGAC............ 2 1.81 ...............................................CUGUAAAUGCACUAUCUGGUACGACA........... 1 0.907 ................................................UGUAAAUGCACUAUCUGGUACGACA........... 6 5.44 ................................................UGUAAAUGCACUAUCUGGUACG.............. 5 4.53 ................................................UGUAAAUGCACUAUCUGGUAC............... 4 3.63 ................................................UGUAAAUGCACUAUCUGGUACGA............. 4 3.63 ................................................UGUAAAUGCACUAUCUGGUACGAC............ 2 1.81 ................................................UGUAAAUGCACUAUCUGGU................. 1 0.907 .................................................GUAAAUGCACUAUCUGGUACGACA........... 8 7.25 .................................................GUAAAUGCACUAUCUGGUACGAC............ 3 2.72 .................................................GUAAAUGCACUAUCUGGUACG.............. 3 2.72 .................................................GUAAAUGCACUAUCUGGUAC............... 3 2.72 .................................................GUAAAUGCACUAUCUGGUACGA............. 2 1.81 .................................................GUAAAUGCACUAUCUGGUACGACAU.......... 1 0.907 .................................................GUAAAUGCACUAUCUGGUA................ 1 0.907 ..................................................UAAAUGCACUAUCUGGUACGACA........... 31567 2.86e+04 ..................................................UAAAUGCACUAUCUGGUACGAC............ 15943 1.45e+04 ..................................................UAAAUGCACUAUCUGGUACGA............. 11421 1.04e+04 ..................................................UAAAUGCACUAUCUGGUACGACAU.......... 809 733 ..................................................UAAAUGCACUAUCUGGUAC............... 498 451 ..................................................UAAAUGCACUAUCUGGUACGACAUC......... 456 413 ..................................................UAAAUGCACUAUCUGGUACG.............. 168 152 ..................................................UAAAUGCACUAUCUGGUACGACAUCU........ 110 99.7 ..................................................UAAAUGCACUAUCUGGUACGACAUCUC....... 19 17.2 ..................................................UAAAUGCACUAUCUGGUACGACAUCUCU...... 5 4.53 ..................................................UAAAUGCACUAUCUGGUACGACAUCUCUC..... 3 2.72 ..................................................UAAAUGCACUAUCUGGUACGACAUCUCUCC.... 1 0.907 ..................................................UAAAUGCACUAUCUGGUACGACAUCUCUCCU... 1 0.907 ...................................................AAAUGCACUAUCUGGUACGACA........... 549 498 ...................................................AAAUGCACUAUCUGGUACGA............. 187 170 ...................................................AAAUGCACUAUCUGGUACG.............. 107 97 ...................................................AAAUGCACUAUCUGGUACGACAU.......... 34 30.8 ...................................................AAAUGCACUAUCUGGUACGACAUC......... 11 9.97 ...................................................AAAUGCACUAUCUGGUACGACAUCU........ 4 3.63 ...................................................AAAUGCACUAUCUGGUACGAC............ 3 2.72 ...................................................AAAUGCACUAUCUGGUACGACAUCUC....... 2 1.81 ...................................................AAAUGCACUAUCUGGUACGACAUCUCUC..... 1 0.907 ....................................................AAUGCACUAUCUGGUACGACA........... 94 85.2 ....................................................AAUGCACUAUCUGGUACGA............. 17 15.4 ....................................................AAUGCACUAUCUGGUACGACAU.......... 13 11.8 ....................................................AAUGCACUAUCUGGUACGACAUC......... 1 0.907 ....................................................AAUGCACUAUCUGGUACGAC............ 1 0.907 .....................................................AUGCACUAUCUGGUACGACA........... 14 12.7 .....................................................AUGCACUAUCUGGUACGAC............ 1 0.907 .....................................................AUGCACUAUCUGGUACGACAU.......... 1 0.907 ......................................................UGCACUAUCUGGUACGACA........... 13 11.8 ......................................................UGCACUAUCUGGUACGACAUC......... 2 1.81 ......................................................UGCACUAUCUGGUACGACAU.......... 1 0.907 GGCAGUUGGGGCUCGUGCCAGAUGCGCGUUUACACGGGCCCUGAAUACUGUAAAUGCACUAUCUGGUACGACAUCUCUCCUGUC (((((..((((.((((((((((((.(((((((((.(...........)))))))))).).)))))))))))..))))..))))) (-37.40)

                                                     ame-miR-277                     Count     RPM (mean number of reads per million)
.............CGUGCCAGAUGCGCGUUUACACGGGC.............................................  5         4.53
.............CGUGCCAGAUGCGCGUUUACACGG...............................................  4         3.63
.............CGUGCCAGAUGCGCGUUUACA..................................................  3         2.72
.............CGUGCCAGAUGCGCGUUUACACG................................................  1         0.907
.............CGUGCCAGAUGCGCGUUUAC...................................................  1         0.907
.................CCAGAUGCGCGUUUACACGG...............................................  1         0.907
................................CACGGGCCCUGAAUACUGUA................................  1         0.907
..................................CGGGCCCUGAAUACUGUAAAUGCACUAUCUGGUA................  1         0.907
...................................GGGCCCUGAAUACUGUAAAUGCACUAUCUGGUAC...............  1         0.907
.....................................GCCCUGAAUACUGUAAAUGCACUAUC.....................  1         0.907
......................................CCCUGAAUACUGUAAAUGC...........................  1         0.907
............................................AUACUGUAAAUGCACUAUC.....................  1         0.907
..............................................ACUGUAAAUGCACUAUCUGGUACGA.............  3         2.72
..............................................ACUGUAAAUGCACUAUCUGGUACG..............  2         1.81
..............................................ACUGUAAAUGCACUAUCUGGU.................  1         0.907
...............................................CUGUAAAUGCACUAUCUGGUACGA.............  7         6.35
...............................................CUGUAAAUGCACUAUCUGG..................  6         5.44
...............................................CUGUAAAUGCACUAUCUGGUA................  3         2.72
...............................................CUGUAAAUGCACUAUCUGGUAC...............  2         1.81
...............................................CUGUAAAUGCACUAUCUGGUACGAC............  2         1.81
...............................................CUGUAAAUGCACUAUCUGGUACGACA...........  1         0.907
................................................UGUAAAUGCACUAUCUGGUACGACA...........  6         5.44
................................................UGUAAAUGCACUAUCUGGUACG..............  5         4.53
................................................UGUAAAUGCACUAUCUGGUAC...............  4         3.63
................................................UGUAAAUGCACUAUCUGGUACGA.............  4         3.63
................................................UGUAAAUGCACUAUCUGGUACGAC............  2         1.81
................................................UGUAAAUGCACUAUCUGGU.................  1         0.907
.................................................GUAAAUGCACUAUCUGGUACGACA...........  8         7.25
.................................................GUAAAUGCACUAUCUGGUACGAC............  3         2.72
.................................................GUAAAUGCACUAUCUGGUACG..............  3         2.72
.................................................GUAAAUGCACUAUCUGGUAC...............  3         2.72
.................................................GUAAAUGCACUAUCUGGUACGA.............  2         1.81
.................................................GUAAAUGCACUAUCUGGUACGACAU..........  1         0.907
.................................................GUAAAUGCACUAUCUGGUA................  1         0.907
..................................................UAAAUGCACUAUCUGGUACGACA...........  31567     2.86e+04
..................................................UAAAUGCACUAUCUGGUACGAC............  15943     1.45e+04
..................................................UAAAUGCACUAUCUGGUACGA.............  11421     1.04e+04
..................................................UAAAUGCACUAUCUGGUACGACAU..........  809       733
..................................................UAAAUGCACUAUCUGGUAC...............  498       451
..................................................UAAAUGCACUAUCUGGUACGACAUC.........  456       413
..................................................UAAAUGCACUAUCUGGUACG..............  168       152
..................................................UAAAUGCACUAUCUGGUACGACAUCU........  110       99.7
..................................................UAAAUGCACUAUCUGGUACGACAUCUC.......  19        17.2
..................................................UAAAUGCACUAUCUGGUACGACAUCUCU......  5         4.53
..................................................UAAAUGCACUAUCUGGUACGACAUCUCUC.....  3         2.72
..................................................UAAAUGCACUAUCUGGUACGACAUCUCUCC....  1         0.907
..................................................UAAAUGCACUAUCUGGUACGACAUCUCUCCU...  1         0.907
...................................................AAAUGCACUAUCUGGUACGACA...........  549       498
...................................................AAAUGCACUAUCUGGUACGA.............  187       170
...................................................AAAUGCACUAUCUGGUACG..............  107       97
...................................................AAAUGCACUAUCUGGUACGACAU..........  34        30.8
...................................................AAAUGCACUAUCUGGUACGACAUC.........  11        9.97
...................................................AAAUGCACUAUCUGGUACGACAUCU........  4         3.63
...................................................AAAUGCACUAUCUGGUACGAC............  3         2.72
...................................................AAAUGCACUAUCUGGUACGACAUCUC.......  2         1.81
...................................................AAAUGCACUAUCUGGUACGACAUCUCUC.....  1         0.907
....................................................AAUGCACUAUCUGGUACGACA...........  94        85.2
....................................................AAUGCACUAUCUGGUACGA.............  17        15.4
....................................................AAUGCACUAUCUGGUACGACAU..........  13        11.8
....................................................AAUGCACUAUCUGGUACGACAUC.........  1         0.907
....................................................AAUGCACUAUCUGGUACGAC............  1         0.907
.....................................................AUGCACUAUCUGGUACGACA...........  14        12.7
.....................................................AUGCACUAUCUGGUACGAC............  1         0.907
.....................................................AUGCACUAUCUGGUACGACAU..........  1         0.907
......................................................UGCACUAUCUGGUACGACA...........  13        11.8
......................................................UGCACUAUCUGGUACGACAUC.........  2         1.81
......................................................UGCACUAUCUGGUACGACAU..........  1         0.907
GGCAGUUGGGGCUCGUGCCAGAUGCGCGUUUACACGGGCCCUGAAUACUGUAAAUGCACUAUCUGGUACGACAUCUCUCCUGUC
(((((..((((.((((((((((((.(((((((((.(...........)))))))))).).)))))))))))..))))..))))) (-37.40)

miRBase

Deep sequencing reads for mature sequence MIMAT0001481

Filter reads

References

References
1	PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).