Deep sequencing reads for mature sequence MIMAT0000944

Stem-loop ID ath-MIR396a
Mature ID ath-miR396a
Reads 
            ath-miR396a                                                                                                                                 Count     RPM (mean number of reads per million)
...UGUAUUCUUCCACAGCUUUCU...............................................................................................................................  2         6.22
......AUUCUUCCACAGCUUUCUUGA............................................................................................................................  2         15.2
......AUUCUUCCACAGCUUUCUUGAACU.........................................................................................................................  1         5.89
.........CUUCCACAGCUUUCUUGAACUG........................................................................................................................  9         0.812
.........CUUCCACAGCUUUCUUGAACU.........................................................................................................................  6         12.2
..........UUCCACAGCUUUCUUGAACUG........................................................................................................................  1559      686
..........UUCCACAGCUUUCUUGAACUGC.......................................................................................................................  38        136
..........UUCCACAGCUUUCUUGAACU.........................................................................................................................  11        12.7
..........UUCCACAGCUUUCUUGAAC..........................................................................................................................  5         24.5
..........UUCCACAGCUUUCUUGAACUGCA......................................................................................................................  2         11.8
..........UUCCACAGCUUUCUUGAA...........................................................................................................................  1         3.11
..........UUCCACAGCUUUCUUGAACUGCAA.....................................................................................................................  1         5.89
...........UCCACAGCUUUCUUGAACUG........................................................................................................................  21        32.8
...........UCCACAGCUUUCUUGAACUGC.......................................................................................................................  4         18.6
............CCACAGCUUUCUUGAACUG........................................................................................................................  139       18.3
............CCACAGCUUUCUUGAACUGCA......................................................................................................................  33        148
............CCACAGCUUUCUUGAACUGC.......................................................................................................................  3         8.29
.............CACAGCUUUCUUGAACUG........................................................................................................................  1         3.11
.............CACAGCUUUCUUGAACUGC.......................................................................................................................  1         0.0903
..............ACAGCUUUCUUGAACUGCAAA....................................................................................................................  1         7.59
...................................................................................................................AUUUGCGGUUCAAUAAAGCUG...............  1         7.59
.....................................................................................................................UUGCGGUUCAAUAAAGCUG...............  1         7.59
.......................................................................................................................GCGGUUCAAUAAAGCUGUGGGAAG........  80        468
.......................................................................................................................GCGGUUCAAUAAAGCUGUGGGA..........  17        100
.......................................................................................................................GCGGUUCAAUAAAGCUGUGGGAA.........  7         41.2
.......................................................................................................................GCGGUUCAAUAAAGCUGUGGG...........  1         5.89
.......................................................................................................................GCGGUUCAAUAAAGCUGUGG............  1         5.89
........................................................................................................................CGGUUCAAUAAAGCUGUGGGA..........  149       519
........................................................................................................................CGGUUCAAUAAAGCUGUGGGAAG........  3         14.6
.........................................................................................................................GGUUCAAUAAAGCUGUGGGAAG........  129       760
.........................................................................................................................GGUUCAAUAAAGCUGUGGGAA.........  9         53
.........................................................................................................................GGUUCAAUAAAGCUGUGGGA..........  2         11.8
.........................................................................................................................GGUUCAAUAAAGCUGUGGGAAGA.......  1         5.89
..........................................................................................................................GUUCAAUAAAGCUGUGGGAAG........  511       2.91e+03
..........................................................................................................................GUUCAAUAAAGCUGUGGGAA.........  48        277
..........................................................................................................................GUUCAAUAAAGCUGUGGGA..........  25        147
..........................................................................................................................GUUCAAUAAAGCUGUGGGAAGA.......  2         11.8
...........................................................................................................................UUCAAUAAAGCUGUGGGAAG........  25        79.5
...........................................................................................................................UUCAAUAAAGCUGUGGGAA.........  1         5.89
...........................................................................................................................UUCAAUAAAGCUGUGGGAAGA.......  1         0.0903
............................................................................................................................UCAAUAAAGCUGUGGGAAG........  3         17.7
............................................................................................................................UCAAUAAAGCUGUGGGAAGA.......  1         5.89
.............................................................................................................................CAAUAAAGCUGUGGGAAG........  1         2.87
.............................................................................................................................CAAUAAAGCUGUGGGAAGA.......  1         11.8
..............................................................................................................................AAUAAAGCUGUGGGAAGAUACA...  2         15.2
..............................................................................................................................AAUAAAGCUGUGGGAAGAUACAGA.  1         5.89
...............................................................................................................................AUAAAGCUGUGGGAAGAUACAG..  198       1.5e+03
...............................................................................................................................AUAAAGCUGUGGGAAGAUACA...  1         7.59
...............................................................................................................................AUAAAGCUGUGGGAAGAUA.....  1         7.59
................................................................................................................................UAAAGCUGUGGGAAGAUACAG..  8         31.4
.................................................................................................................................AAAGCUGUGGGAAGAUACAGA.  20        150
CUCUGUAUUCUUCCACAGCUUUCUUGAACUGCAAAACUUCUUCAGAUUUUUUUUUUUUUCUUUUGAUAUCUCUUACGCAUAAAAUAGUGAUUUUCUUCAUAUCUCUGCUCGAUUGAUUUGCGGUUCAAUAAAGCUGUGGGAAGAUACAGAC
.(((((((..((((((((((((.((((((((((((.(.((..((((............((....))....................((((......))))...))))...))..).)))))))))))).))))))))))))..))))))). (-51.40)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000003 2545whole body GEO : GSM253622 [ Mi S et al.]
ER0000000004 270whole body GEO : GSM253623 [ Mi S et al.]
ER0000000005 920whole body GEO : GSM253624 [ Mi S et al.]
ER0000000006 71whole body GEO : GSM253625 [ Mi S et al.]
ER0000000208 72flower GEO : GSM118372 [ Rajagopalan R et al.]
ER0000000209 60rosette leaf GEO : GSM118373 [ Rajagopalan R et al.]
ER0000000210 213seedling GEO : GSM118374 [ Rajagopalan R et al.]
ER0000000211 161silique GEO : GSM118375 [ Rajagopalan R et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).