Deep sequencing reads for mature sequence MIMAT0000720

Stem-loop ID hsa-mir-376c
Mature ID hsa-miR-376c-3p
Reads 
  hsa-miR-376c-5p                       hsa-miR-376c-3p             Count     RPM (mean number of reads per million)
......UGGAUAUUCCUUCUAUGUUUA.......................................  2         0.0313
.........................................AAACAUAGAGGAAAUUCCACGUUU.  10        47.2
.........................................AAACAUAGAGGAAAUUCCACG....  3         4.56
.........................................AAACAUAGAGGAAAUUCCACGU...  3         13
.........................................AAACAUAGAGGAAAUUCCACGUU..  3         12.9
.........................................AAACAUAGAGGAAAUUCCACGUUUU  1         4.53
..........................................AACAUAGAGGAAAUUCCACGU...  251       4.01
..........................................AACAUAGAGGAAAUUCCACGUU..  20        0.313
..........................................AACAUAGAGGAAAUUCCACG....  10        0.157
..........................................AACAUAGAGGAAAUUCCAC.....  2         0.0313
............................................CAUAGAGGAAAUUCCACGUUU.  2         0.0313
AAAAGGUGGAUAUUCCUUCUAUGUUUAUGUUAUUUAUGGUUAAACAUAGAGGAAAUUCCACGUUUU
((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))) (-24.02)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000104 3melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 344 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000136 3squamous cell GEO : GSM532872 [ Witten D et al.]
ER0000000142 3squamous cell GEO : GSM532878 [ Witten D et al.]
ER0000000148 15squamous cell GEO : GSM532884 [ Witten D et al.]
ER0000000155 4 GEO : GSM532891 normal cervix [ Witten D et al.]
ER0000000159 12 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000162 1squamous cell GEO : GSM532898 [ Witten D et al.]
ER0000000163 10 GEO : GSM532899 normal cervix [ Witten D et al.]
ER0000000164 1squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000167 14 GEO : GSM532903 normal cervix [ Witten D et al.]
ER0000000170 1adenosquamous cell GEO : GSM532906 [ Witten D et al.]
ER0000000173 32 GEO : GSM532909 normal cervix [ Witten D et al.]
ER0000000176 23adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000177 7 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000179 4 GEO : GSM532915 normal cervix [ Witten D et al.]
ER0000000180 3squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000182 9squamous cell GEO : GSM532918 [ Witten D et al.]
ER0000000184 3squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000185 13 GEO : GSM532921 normal cervix [ Witten D et al.]
ER0000000187 4 GEO : GSM532923 normal cervix [ Witten D et al.]
ER0000000188 1squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000267 1 GEO : GSM368184 tissue: clinically negative of NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).