Deep sequencing reads for mature sequence MIMAT0000710

Stem-loop ID

hsa-mir-365a

Mature ID

hsa-miR-365a-3p

Reads

              hsa-miR-365a-5p                        hsa-miR-365a-3p                     Count     RPM (mean number of reads per million)
.............UGAGGGACUUUUGGGGGCAGAU....................................................  10        0.314
.............UGAGGGACUUUUGGGGGCAGAUGU..................................................  8         0.164
.............UGAGGGACUUUUGGGGGCAGAUGUG.................................................  7         0.101
.............UGAGGGACUUUUGGGGGCAGAUGUGU................................................  4         0.0968
.............UGAGGGACUUUUGGGGGCAGA.....................................................  2         0.0407
.............UGAGGGACUUUUGGGGGCAGAUG...................................................  2         0.0407
..............GAGGGACUUUUGGGGGCAGAUGU..................................................  11        0.132
..............GAGGGACUUUUGGGGGCAGAUGUGU................................................  4         0.0492
..............GAGGGACUUUUGGGGGCAGAU....................................................  2         0.0226
...............AGGGACUUUUGGGGGCAGAUGUG.................................................  1122      26.7
...............AGGGACUUUUGGGGGCAGAUGU..................................................  425       8.87
...............AGGGACUUUUGGGGGCAGAUGUGU................................................  142       3.01
...............AGGGACUUUUGGGGGCAGAU....................................................  84        2.65
...............AGGGACUUUUGGGGGCAGAUG...................................................  79        2.3
...............AGGGACUUUUGGGGGCAGA.....................................................  25        0.879
...............AGGGACUUUUGGGGGCAGAUGUGUU...............................................  12        0.232
................GGGACUUUUGGGGGCAGAUGUG.................................................  37        0.83
................GGGACUUUUGGGGGCAGAUGUGU................................................  22        0.457
................GGGACUUUUGGGGGCAGAUGU..................................................  12        0.196
.................GGACUUUUGGGGGCAGAUGUG.................................................  2         0.0564
.......................................................UAAUGCCCCUAAAAAUCCUUAU..........  4887      156
.......................................................UAAUGCCCCUAAAAAUCCUUA...........  447       17.8
.......................................................UAAUGCCCCUAAAAAUCCUUAUU.........  283       8.8
.......................................................UAAUGCCCCUAAAAAUCCUU............  178       49.1
.......................................................UAAUGCCCCUAAAAAUC...............  30        0.633
.......................................................UAAUGCCCCUAAAAAUCCU.............  20        0.643
.......................................................UAAUGCCCCUAAAAAUCC..............  13        0.202
........................................................AAUGCCCCUAAAAAUCCUUAUU.........  7         0.128
........................................................AAUGCCCCUAAAAAUCCUUAU..........  6         0.154
........................................................AAUGCCCCUAAAAAUCCUUA...........  2         0.0634
.........................................................AUGCCCCUAAAAAUCCUUAU..........  2         0.0267
............................................................CCCCUAAAAAUCCUUAU..........  5         137
ACCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGAUGUGUUUCCAUUCCACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCA
...((((((..((((((((..(((((((((((((((((.........))).)))....))))))))))).))))))))..)))))). (-35.40)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000001	32	embryonic stem cell	GEO : GSM541796		[ Bar M et al.]
ER0000000002	167	embryonic stem cell	GEO : GSM541797		[ Bar M et al.]
ER0000000103	915	melanoblast	GEO : GSM458535		[ Stark MS et al.]
ER0000000104	164	melanocyte	GEO : GSM458536		[ Stark MS et al.]
ER0000000105	2663		GEO : GSM458537	cell line: primary giant congental nevus	[ Stark MS et al.]
ER0000000106	404	melanoma	GEO : GSM458538	cell line: secondary acral melanoma	[ Stark MS et al.]
ER0000000107	292	melanoma	GEO : GSM458539	cell line: secondary mucosal melanoma	[ Stark MS et al.]
ER0000000108	577	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000109	237	melanoma	GEO : GSM458541	cell line: primary uveal melanoma	[ Stark MS et al.]
ER0000000110	364	melanoma	GEO : GSM458542	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000111	543	melanoma	GEO : GSM458543	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000112	691	melanoma	GEO : GSM458544	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000113	1415	melanoma	GEO : GSM458545	cell line: secondary cutaneous melanoma from a chronically sun-damaged body site	[ Stark MS et al.]
ER0000000114	329	melanoma	GEO : GSM458546	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000141	3		GEO : GSM532877	normal cervix	[ Witten D et al.]
ER0000000147	3		GEO : GSM532883	normal cervix	[ Witten D et al.]
ER0000000151	4		GEO : GSM532887	normal cervix	[ Witten D et al.]
ER0000000157	1		GEO : GSM532893	normal cervix	[ Witten D et al.]
ER0000000163	1		GEO : GSM532899	normal cervix	[ Witten D et al.]
ER0000000167	2		GEO : GSM532903	normal cervix	[ Witten D et al.]
ER0000000171	4		GEO : GSM532907	normal cervix	[ Witten D et al.]
ER0000000173	2		GEO : GSM532909	normal cervix	[ Witten D et al.]
ER0000000174	2	squamous cell	GEO : GSM532910		[ Witten D et al.]
ER0000000181	3		GEO : GSM532917	normal cervix	[ Witten D et al.]
ER0000000193	1		GEO : GSM532929	normal cervix	[ Witten D et al.]
ER0000000262	1		GEO : GSM337570	antibody: anti-Ago1 4B8
ER0000000263	19		GEO : GSM337571	antibody: anti-Ago2 11A9

References

1. PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).