Deep sequencing reads for mature sequence MIMAT0000666

Stem-loop ID mmu-mir-320
Mature ID mmu-miR-320-3p
Reads 
               mmu-miR-320-5p                  mmu-miR-320-3p                        Count     RPM (mean number of reads per million)
............UCCGCCUUCUCUUCCCGGUUCU................................................  2         0.0048
............UCCGCCUUCUCUUCCCGGUUCUU...............................................  1         0.00575
.............CCGCCUUCUCUUCCCGGUUCUUC..............................................  1         0.00285
...............GCCUUCUCUUCCCGGUUCUUCC.............................................  3         0.0174
...............GCCUUCUCUUCCCGGUU..................................................  2         0.0131
...............GCCUUCUCUUCCCGGUUCUUCCC............................................  1         0.00257
..................UUCUCUUCCCGGUUCUUCCCGGAG........................................  2         0.0231
..................UUCUCUUCCCGGUUCUUCCCGGAGU.......................................  1         0.0104
.........................CCCGGUUCUUCCCGGAGUCGGG...................................  2         0.0205
.........................CCCGGUUCUUCCCGGAGUCGGGAA.................................  1         0.0127
...........................CGGUUCUUCCCGGAGUCGGG...................................  6         0.0226
...........................CGGUUCUUCCCGGAGUCGGGAAAAGC.............................  1         0.00257
............................GGUUCUUCCCGGAGUCGGG...................................  1         0.00341
................................CUUCCCGGAGUCGGGAAAAGCUGG..........................  1         0.00975
...................................CCCGGAGUCGGGAAAAGCU............................  5         0.0337
...................................CCCGGAGUCGGGAAAAGC.............................  2         0.00405
...................................CCCGGAGUCGGGAAAAGCUG...........................  2         0.0121
...................................CCCGGAGUCGGGAAAAGCUGGGUUGA.....................  1         0.0104
....................................CCGGAGUCGGGAAAAGCUGGGUUGAG....................  2         0.0231
....................................CCGGAGUCGGGAAAAGCUGGGUUG......................  1         0.00412
.....................................CGGAGUCGGGAAAAGCUGGGUU.......................  2         0.0438
.....................................CGGAGUCGGGAAAAGCUG...........................  1         0.0127
.....................................CGGAGUCGGGAAAAGCUGGGU........................  1         0.132
...........................................CGGGAAAAGCUGGGUUGAGAG..................  1         0.00323
...........................................CGGGAAAAGCUGGGUUGAGAGGGCG..............  1         0.00912
...........................................CGGGAAAAGCUGGGUUGAGAGGGCGA.............  1         0.00266
.............................................GGAAAAGCUGGGUUGAGAGGGC...............  1         0.00451
.............................................GGAAAAGCUGGGUUGAGAGGG................  1         0.00412
..............................................GAAAAGCUGGGUUGAGAGGGCGA.............  4314      16.2
..............................................GAAAAGCUGGGUUGAGAGGGCG..............  2602      8.76
..............................................GAAAAGCUGGGUUGAGAGGGC...............  550       1.85
..............................................GAAAAGCUGGGUUGAGAGGGCGAA............  412       1.49
..............................................GAAAAGCUGGGUUGAGAGG.................  247       0.966
..............................................GAAAAGCUGGGUUGAGAGGG................  201       0.691
..............................................GAAAAGCUGGGUUGAGAGGGCGAAA...........  119       0.414
..............................................GAAAAGCUGGGUUGAGAGGGCGAAAA..........  24        0.0893
..............................................GAAAAGCUGGGUUGAGA...................  7         0.485
..............................................GAAAAGCUGGGUUGAGAGGGCGAAAAA.........  4         0.00995
..............................................GAAAAGCUGGGUUGAGAG..................  3         0.272
...............................................AAAAGCUGGGUUGAGAGGGCGA.............  631624    2.46e+03
...............................................AAAAGCUGGGUUGAGAGGGCGAA............  249749    940
...............................................AAAAGCUGGGUUGAGAGGGCG..............  129467    534
...............................................AAAAGCUGGGUUGAGAGGGCGAAA...........  57627     223
...............................................AAAAGCUGGGUUGAGAGGGC...............  34178     144
...............................................AAAAGCUGGGUUGAGAGGG................  14457     59.9
...............................................AAAAGCUGGGUUGAGAGGGCGAAAA..........  8358      33.5
...............................................AAAAGCUGGGUUGAGAGGGCGAAAAA.........  1192      4.53
...............................................AAAAGCUGGGUUGAGAGG.................  215       4.59
...............................................AAAAGCUGGGUUGAGAG..................  71        0.73
...............................................AAAAGCUGGGUUGAGAGGGCGAAAAAG........  30        0.129
................................................AAAGCUGGGUUGAGAGGGCGA.............  31935     125
................................................AAAGCUGGGUUGAGAGGGCGAA............  20205     70.7
................................................AAAGCUGGGUUGAGAGGGCG..............  7234      30.5
................................................AAAGCUGGGUUGAGAGGGCGAAA...........  6718      23.4
................................................AAAGCUGGGUUGAGAGGGC...............  2283      11.2
................................................AAAGCUGGGUUGAGAGGGCGAAAA..........  1220      4.43
................................................AAAGCUGGGUUGAGAGGGCGAAAAA.........  176       0.627
................................................AAAGCUGGGUUGAGAGGG................  58        0.657
................................................AAAGCUGGGUUGAGAGG.................  10        0.169
................................................AAAGCUGGGUUGAGAGGGCGAAAAAG........  4         0.0183
.................................................AAGCUGGGUUGAGAGGGCGAA............  6097      21.7
.................................................AAGCUGGGUUGAGAGGGCGA.............  5168      19.6
.................................................AAGCUGGGUUGAGAGGGCGAAA...........  4220      15.3
.................................................AAGCUGGGUUGAGAGGGCG..............  658       2.45
.................................................AAGCUGGGUUGAGAGGGCGAAAA..........  518       2.04
.................................................AAGCUGGGUUGAGAGGGCGAAAAA.........  116       0.437
.................................................AAGCUGGGUUGAGAGGG................  21        0.319
.................................................AAGCUGGGUUGAGAGGGC...............  4         0.0368
.................................................AAGCUGGGUUGAGAGGGCGAAAAAG........  2         0.00763
..................................................AGCUGGGUUGAGAGGGCGA.............  35        0.158
..................................................AGCUGGGUUGAGAGGGCGAA............  29        0.139
..................................................AGCUGGGUUGAGAGGGCGAAA...........  13        0.127
..................................................AGCUGGGUUGAGAGGGCGAAAA..........  6         0.023
..................................................AGCUGGGUUGAGAGGGCG..............  2         0.00455
..................................................AGCUGGGUUGAGAGGGCGAAAAAGGA......  1         0.00207
...................................................GCUGGGUUGAGAGGGCGA.............  11        0.096
...................................................GCUGGGUUGAGAGGGCGAA............  10        0.0567
...................................................GCUGGGUUGAGAGGGCG..............  5         0.0452
...................................................GCUGGGUUGAGAGGGCGAAA...........  4         0.0264
...................................................GCUGGGUUGAGAGGGCGAAAAA.........  3         0.0084
....................................................CUGGGUUGAGAGGGCGA.............  55        0.835
....................................................CUGGGUUGAGAGGGCGAA............  23        0.567
....................................................CUGGGUUGAGAGGGCGAAA...........  19        0.399
....................................................CUGGGUUGAGAGGGCGAAAAA.........  4         0.0275
....................................................CUGGGUUGAGAGGGCGAAAA..........  3         0.0464
....................................................CUGGGUUGAGAGGGCGAAAAAG........  2         0.00717
.....................................................UGGGUUGAGAGGGCGAA............  28        0.847
.....................................................UGGGUUGAGAGGGCGAAA...........  25        0.412
.....................................................UGGGUUGAGAGGGCGAAAAA.........  7         0.0267
.....................................................UGGGUUGAGAGGGCGAAAAAG........  3         0.00813
.....................................................UGGGUUGAGAGGGCGAAAA..........  3         0.0269
......................................................GGGUUGAGAGGGCGAAA...........  1         0.0104
GCCUCGCCGCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAUGUGGG
......(((((((.(((((((((..(((((((.((((((....)))))).)))))))..)))))))))....)))..)))). (-44.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 5ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 649ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 512ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 44ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 39testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 155testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 182testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 17testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 349brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 1667brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 2190brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 204brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 7966brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 10whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 115whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 111whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 14whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 238whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 357whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 425whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 467whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 510whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 457whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 409whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 1728whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 93embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 622embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 705embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 77embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 113embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 458embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 469embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 29embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 746embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 2595embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 2730embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 20090bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 11545bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 15065spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 12615spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 42717spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 12276spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 15262spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 26373spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 15234spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 20752peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 4341spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 10543lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 144535lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 17934bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 7902bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 89865bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 12411peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 2368peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 15810bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 6726bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 17141spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 23331thymus GEO : GSM539856
ER0000000238 20019spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 26585spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 6723spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 27469lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 75243lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 37140lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 81350spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 24487lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 48837lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 26230 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 13044 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 4578heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 27681brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 22616lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 8353liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 27498kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 13706pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 48143skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 6145skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 44604salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 831testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 26004ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 13260spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 32654lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).