Deep sequencing reads for mature sequence MIMAT0000657

Stem-loop ID mmu-mir-200c
Mature ID mmu-miR-200c-3p
Reads 
   mmu-miR-200c-5p                         mmu-miR-200c-3p             Count     RPM (mean number of reads per million)
....CGUCUUACCCAGCAGUGUUUGG...........................................  69        0.628
....CGUCUUACCCAGCAGUGUUUGGG..........................................  2         0.0178
....CGUCUUACCCAGCAGUGUUU.............................................  1         0.00227
....CGUCUUACCCAGCAGUGUUUG............................................  1         0.0104
.....GUCUUACCCAGCAGUGUUUGGG..........................................  11        0.194
.....GUCUUACCCAGCAGUGUUUGG...........................................  4         0.011
.....GUCUUACCCAGCAGUGUUUGGGU.........................................  3         0.0416
.....GUCUUACCCAGCAGUGUU..............................................  1         0.00516
.....GUCUUACCCAGCAGUGUUUG............................................  1         0.0101
.....GUCUUACCCAGCAGUGUUU.............................................  1         0.0144
........UUACCCAGCAGUGUUUGG...........................................  1         0.0105
..........................GUGCUGGUUGGGAGUCUC.........................  3         0.00771
..........................GUGCUGGUUGGGAGUCUCU........................  2         0.00967
........................................UCUCUAAUACUGCCGGGUAAUGAUGGA..  67        0.661
.........................................CUCUAAUACUGCCGGGUAAUGAUGGA..  2         0.0218
..........................................UCUAAUACUGCCGGGUAAUGAUGGA..  1158      16.7
..........................................UCUAAUACUGCCGGGUAAUGAUGG...  106       1.34
..........................................UCUAAUACUGCCGGGUAAUGAUG....  6         0.108
..........................................UCUAAUACUGCCGGGUAAUGAU.....  5         0.0444
..........................................UCUAAUACUGCCGGGUAAUGA......  4         0.0183
...........................................CUAAUACUGCCGGGUAAUGAUGG...  190       1.97
...........................................CUAAUACUGCCGGGUAAUGAUGGA..  145       1.69
...........................................CUAAUACUGCCGGGUAAUGAUG....  86        0.581
...........................................CUAAUACUGCCGGGUAAUGAU.....  34        0.23
...........................................CUAAUACUGCCGGGUAAUGA......  13        0.443
...........................................CUAAUACUGCCGGGUAAUG.......  3         0.0161
............................................UAAUACUGCCGGGUAAUGAUGGA..  28152     348
............................................UAAUACUGCCGGGUAAUGAUGG...  14969     159
............................................UAAUACUGCCGGGUAAUGAUG....  2979      33.3
............................................UAAUACUGCCGGGUAAUGAU.....  1696      16.3
............................................UAAUACUGCCGGGUAAUGA......  460       1.81
............................................UAAUACUGCCGGGUAAUGAUGGAG.  150       1.48
............................................UAAUACUGCCGGGUAAUG.......  8         0.0612
............................................UAAUACUGCCGGGUAAU........  2         0.017
.............................................AAUACUGCCGGGUAAUGAUGGA..  110       10.6
.............................................AAUACUGCCGGGUAAUGAUGG...  44        0.349
.............................................AAUACUGCCGGGUAAUGAUG....  17        0.326
.............................................AAUACUGCCGGGUAAUGAU.....  6         0.169
.............................................AAUACUGCCGGGUAAUGAUGGAG.  3         0.0149
.............................................AAUACUGCCGGGUAAUGA......  2         0.00499
..............................................AUACUGCCGGGUAAUGAUGGA..  73        1.24
..............................................AUACUGCCGGGUAAUGAUGG...  27        0.224
..............................................AUACUGCCGGGUAAUGAUG....  3         0.0154
..............................................AUACUGCCGGGUAAUGAU.....  1         0.00952
...............................................UACUGCCGGGUAAUGAUGGA..  21        0.338
...............................................UACUGCCGGGUAAUGAUGG...  2         0.00462
................................................ACUGCCGGGUAAUGAUGGA..  71        2.59
................................................ACUGCCGGGUAAUGAUGG...  32        1.44
.................................................CUGCCGGGUAAUGAUGGA..  24        8.19
.................................................CUGCCGGGUAAUGAUGG...  10        0.183
..................................................UGCCGGGUAAUGAUGGA..  15        0.131
CCCUCGUCUUACCCAGCAGUGUUUGGGUGCUGGUUGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGG
((..((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..)) (-31.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 15ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 957ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 852ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 84ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 21testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 97testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 110testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 13testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 30brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 133brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 166brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 38brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 644brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 122whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 865whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 1064whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 154whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 3045whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 4461whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 4990whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 4897whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 4820whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 4836whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 4485whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 15951whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 207embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1017embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1348embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 133embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 135embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 361embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 462embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 35embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 197embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 485embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 666embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 104bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 60bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 371spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 326spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 836spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 100spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 106spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 100spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 96spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 173peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 30spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 130lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 15lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 28bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 31bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 304bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 515peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 63peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 44bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 14bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 15spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 75thymus GEO : GSM539856
ER0000000238 116spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 257spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 78spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 125lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 71lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 64lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 324spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 75lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 130lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 1871 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 5heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 9brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1509lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 42liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 2393kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 5852pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 2699skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 77skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 10629salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 41testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 745ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 88spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 744lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).