miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000590
Stem-loop ID	mmu-mir-342
Mature ID	mmu-miR-342-3p
Reads	mmu-miR-342-5p mmu-miR-342-3p Count RPM (mean number of reads per million) GAAAAUGGGCUCAAGGUGA................................................................................ 2 0.00615 ..................AGGGGUGCUAUCUGUGAUUGAGG.......................................................... 3863 17.4 ..................AGGGGUGCUAUCUGUGAUUGAG........................................................... 3547 12.9 ..................AGGGGUGCUAUCUGUGAUUGA............................................................ 3037 9.62 ..................AGGGGUGCUAUCUGUGAUUGAGGGA........................................................ 1652 6.37 ..................AGGGGUGCUAUCUGUGAUUGAGGGAC....................................................... 1215 4.47 ..................AGGGGUGCUAUCUGUGAUU.............................................................. 1162 3.5 ..................AGGGGUGCUAUCUGUGAUUGAGGGACA...................................................... 951 3.66 ..................AGGGGUGCUAUCUGUGAUUGAGGG......................................................... 909 3.56 ..................AGGGGUGCUAUCUGUGAUUG............................................................. 534 1.61 ..................AGGGGUGCUAUCUGUGAU............................................................... 107 0.27 ..................AGGGGUGCUAUCUGUGAUUGAGGGACAU..................................................... 88 0.32 ..................AGGGGUGCUAUCUGUGAUUGAGGGACAUG.................................................... 2 0.00931 ..................AGGGGUGCUAUCUGUGA................................................................ 1 0.00227 ...................GGGGUGCUAUCUGUGAUUGAGGGAC....................................................... 635 2.58 ...................GGGGUGCUAUCUGUGAUUGAGGGA........................................................ 490 1.85 ...................GGGGUGCUAUCUGUGAUUGAGGGACA...................................................... 393 1.58 ...................GGGGUGCUAUCUGUGAUUGAGG.......................................................... 392 1.64 ...................GGGGUGCUAUCUGUGAUUGAGGG......................................................... 277 1.11 ...................GGGGUGCUAUCUGUGAUUGAG........................................................... 143 0.496 ...................GGGGUGCUAUCUGUGAUUGA............................................................ 76 0.427 ...................GGGGUGCUAUCUGUGAUUGAGGGACAU..................................................... 36 0.121 ...................GGGGUGCUAUCUGUGAUUG............................................................. 10 0.0326 ...................GGGGUGCUAUCUGUGAUUGAGGGACAUGG................................................... 1 0.00516 ....................GGGUGCUAUCUGUGAUUGAGGGACA...................................................... 4 0.0136 ....................GGGUGCUAUCUGUGAUUGAGG.......................................................... 2 0.00568 ....................GGGUGCUAUCUGUGAUUGAGGGAC....................................................... 2 0.00343 ....................GGGUGCUAUCUGUGAUUGA............................................................ 1 0.0104 ....................GGGUGCUAUCUGUGAUUGAG........................................................... 1 0.00847 .....................GGUGCUAUCUGUGAUUGAGG.......................................................... 2 0.0124 .....................GGUGCUAUCUGUGAUUGAGGGA........................................................ 2 0.01 .....................GGUGCUAUCUGUGAUUGA............................................................ 1 0.00227 .....................GGUGCUAUCUGUGAUUGAGGG......................................................... 1 0.00304 ......................GUGCUAUCUGUGAUUGAGGGAC....................................................... 4 0.00917 ......................GUGCUAUCUGUGAUUGAGGGA........................................................ 4 0.00916 ......................GUGCUAUCUGUGAUUGAGG.......................................................... 2 0.00209 .......................UGCUAUCUGUGAUUGAGGGACA...................................................... 111 0.404 .......................UGCUAUCUGUGAUUGAGGGAC....................................................... 108 0.315 .......................UGCUAUCUGUGAUUGAGGGA........................................................ 60 0.184 .......................UGCUAUCUGUGAUUGAGGGACAU..................................................... 30 0.0819 .......................UGCUAUCUGUGAUUGAGGG......................................................... 14 0.0531 .......................UGCUAUCUGUGAUUGAGGGACAUG.................................................... 1 0.00451 .......................UGCUAUCUGUGAUUGAGG.......................................................... 1 0.00975 ........................GCUAUCUGUGAUUGAGGGAC....................................................... 3 0.0123 ........................GCUAUCUGUGAUUGAGG.......................................................... 1 0.00847 ........................GCUAUCUGUGAUUGAGGGA........................................................ 1 0.00105 .........................CUAUCUGUGAUUGAGGGAC....................................................... 1 0.00575 ..........................UAUCUGUGAUUGAGGGACA...................................................... 1 0.00451 ..........................UAUCUGUGAUUGAGGGACAUGGUCAA............................................... 1 0.00238 ...........................AUCUGUGAUUGAGGGACA...................................................... 1 0.00952 .............................CUGUGAUUGAGGGACAUGGUCA................................................ 1 0.00105 ......................................AGGGACAUGGUCAAUGGAAUUG....................................... 1 0.00304 ......................................AGGGACAUGGUCAAUGGAAUU........................................ 1 0.00105 .........................................GACAUGGUCAAUGGAAUUG....................................... 5 0.0241 .........................................GACAUGGUCAAUGGAAUUGUC..................................... 2 0.00509 ..........................................ACAUGGUCAAUGGAAUUGUCU.................................... 2 0.00408 ...........................................CAUGGUCAAUGGAAUUGUC..................................... 621 2.73 ...........................................CAUGGUCAAUGGAAUUG....................................... 31 0.0992 ...........................................CAUGGUCAAUGGAAUUGUCUC................................... 31 0.111 ...........................................CAUGGUCAAUGGAAUUGUCU.................................... 4 0.0117 ...........................................CAUGGUCAAUGGAAUUGU...................................... 1 0.0118 ............................................AUGGUCAAUGGAAUUGUC..................................... 2 0.00642 ........................................................AUUGUCUCACACAGAAAUCGCACCCGU................ 1 0.0025 ........................................................AUUGUCUCACACAGAAAUCGCACC................... 1 0.00322 ...........................................................GUCUCACACAGAAAUCGCACCCG................. 1 0.00227 ............................................................UCUCACACAGAAAUCGCACCCGU................ 42936 264 ............................................................UCUCACACAGAAAUCGCACCCGUC............... 42028 286 ............................................................UCUCACACAGAAAUCGCACCCG................. 9350 37.3 ............................................................UCUCACACAGAAAUCGCACCCGUCA.............. 8030 45.6 ............................................................UCUCACACAGAAAUCGCACCC.................. 4120 13.2 ............................................................UCUCACACAGAAAUCGCACC................... 3223 9.3 ............................................................UCUCACACAGAAAUCGCAC.................... 2253 7.76 ............................................................UCUCACACAGAAAUCGC...................... 354 10.3 ............................................................UCUCACACAGAAAUCGCA..................... 68 2.53 ............................................................UCUCACACAGAAAUCGCACCCGUCAC............. 37 0.112 ............................................................UCUCACACAGAAAUCGCACCCGUCACC............ 7 0.0278 .............................................................CUCACACAGAAAUCGCACCCGUC............... 387 2.63 .............................................................CUCACACAGAAAUCGCACCCGU................ 294 1.9 .............................................................CUCACACAGAAAUCGCACCCGUCA.............. 136 0.748 .............................................................CUCACACAGAAAUCGCACCCG................. 63 0.378 .............................................................CUCACACAGAAAUCGCACCC.................. 41 0.142 .............................................................CUCACACAGAAAUCGCACC................... 17 0.0557 .............................................................CUCACACAGAAAUCGCAC.................... 2 0.0829 .............................................................CUCACACAGAAAUCGCA..................... 1 0.0101 ..............................................................UCACACAGAAAUCGCACCCGUCA.............. 5570 24.8 ..............................................................UCACACAGAAAUCGCACCCGUC............... 2543 11.9 ..............................................................UCACACAGAAAUCGCACCCGU................ 1381 6.91 ..............................................................UCACACAGAAAUCGCACCC.................. 459 1.46 ..............................................................UCACACAGAAAUCGCACCCG................. 298 1.05 ..............................................................UCACACAGAAAUCGCACCCGUCACC............ 8 0.0322 ..............................................................UCACACAGAAAUCGCACCCGUCAC............. 8 0.031 ..............................................................UCACACAGAAAUCGCACC................... 3 0.0144 ..............................................................UCACACAGAAAUCGCACCCGUCACCU........... 1 0.00259 ...............................................................CACACAGAAAUCGCACCCGUCA.............. 58 0.161 ...............................................................CACACAGAAAUCGCACCCGUC............... 49 0.803 ...............................................................CACACAGAAAUCGCACCCGU................ 23 0.136 ...............................................................CACACAGAAAUCGCACCCG................. 7 0.0206 ...............................................................CACACAGAAAUCGCACCC.................. 1 0.0123 ...............................................................CACACAGAAAUCGCACC................... 1 0.0101 ...............................................................CACACAGAAAUCGCACCCGUCAC............. 1 0.00259 ................................................................ACACAGAAAUCGCACCCGUC............... 111 0.857 ................................................................ACACAGAAAUCGCACCCGUCA.............. 107 0.607 ................................................................ACACAGAAAUCGCACCCGU................ 86 0.445 ................................................................ACACAGAAAUCGCACCCG................. 12 0.0398 ................................................................ACACAGAAAUCGCACCC.................. 2 0.0127 ................................................................ACACAGAAAUCGCACCCGUCAC............. 1 0.00465 .................................................................CACAGAAAUCGCACCCGUC............... 14 0.992 .................................................................CACAGAAAUCGCACCCGU................ 8 0.162 .................................................................CACAGAAAUCGCACCCGUCA.............. 3 0.00711 ..................................................................ACAGAAAUCGCACCCGUC............... 52 1.12 ..................................................................ACAGAAAUCGCACCCGU................ 30 0.443 ..................................................................ACAGAAAUCGCACCCGUCA.............. 6 0.0215 ...................................................................CAGAAAUCGCACCCGUC............... 13 0.188 ...................................................................CAGAAAUCGCACCCGUCA.............. 5 0.0276 ....................................................................AGAAAUCGCACCCGUCA.............. 6 0.101 GAAAAUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUCAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCUGA ......((((.((((((((.((((((..((((((.....((((((...((....))..)))))).))))))....)))))).))))))))))))..... (-48.90)

                  mmu-miR-342-5p                            mmu-miR-342-3p                           Count     RPM (mean number of reads per million)
GAAAAUGGGCUCAAGGUGA................................................................................  2         0.00615
..................AGGGGUGCUAUCUGUGAUUGAGG..........................................................  3863      17.4
..................AGGGGUGCUAUCUGUGAUUGAG...........................................................  3547      12.9
..................AGGGGUGCUAUCUGUGAUUGA............................................................  3037      9.62
..................AGGGGUGCUAUCUGUGAUUGAGGGA........................................................  1652      6.37
..................AGGGGUGCUAUCUGUGAUUGAGGGAC.......................................................  1215      4.47
..................AGGGGUGCUAUCUGUGAUU..............................................................  1162      3.5
..................AGGGGUGCUAUCUGUGAUUGAGGGACA......................................................  951       3.66
..................AGGGGUGCUAUCUGUGAUUGAGGG.........................................................  909       3.56
..................AGGGGUGCUAUCUGUGAUUG.............................................................  534       1.61
..................AGGGGUGCUAUCUGUGAU...............................................................  107       0.27
..................AGGGGUGCUAUCUGUGAUUGAGGGACAU.....................................................  88        0.32
..................AGGGGUGCUAUCUGUGAUUGAGGGACAUG....................................................  2         0.00931
..................AGGGGUGCUAUCUGUGA................................................................  1         0.00227
...................GGGGUGCUAUCUGUGAUUGAGGGAC.......................................................  635       2.58
...................GGGGUGCUAUCUGUGAUUGAGGGA........................................................  490       1.85
...................GGGGUGCUAUCUGUGAUUGAGGGACA......................................................  393       1.58
...................GGGGUGCUAUCUGUGAUUGAGG..........................................................  392       1.64
...................GGGGUGCUAUCUGUGAUUGAGGG.........................................................  277       1.11
...................GGGGUGCUAUCUGUGAUUGAG...........................................................  143       0.496
...................GGGGUGCUAUCUGUGAUUGA............................................................  76        0.427
...................GGGGUGCUAUCUGUGAUUGAGGGACAU.....................................................  36        0.121
...................GGGGUGCUAUCUGUGAUUG.............................................................  10        0.0326
...................GGGGUGCUAUCUGUGAUUGAGGGACAUGG...................................................  1         0.00516
....................GGGUGCUAUCUGUGAUUGAGGGACA......................................................  4         0.0136
....................GGGUGCUAUCUGUGAUUGAGG..........................................................  2         0.00568
....................GGGUGCUAUCUGUGAUUGAGGGAC.......................................................  2         0.00343
....................GGGUGCUAUCUGUGAUUGA............................................................  1         0.0104
....................GGGUGCUAUCUGUGAUUGAG...........................................................  1         0.00847
.....................GGUGCUAUCUGUGAUUGAGG..........................................................  2         0.0124
.....................GGUGCUAUCUGUGAUUGAGGGA........................................................  2         0.01
.....................GGUGCUAUCUGUGAUUGA............................................................  1         0.00227
.....................GGUGCUAUCUGUGAUUGAGGG.........................................................  1         0.00304
......................GUGCUAUCUGUGAUUGAGGGAC.......................................................  4         0.00917
......................GUGCUAUCUGUGAUUGAGGGA........................................................  4         0.00916
......................GUGCUAUCUGUGAUUGAGG..........................................................  2         0.00209
.......................UGCUAUCUGUGAUUGAGGGACA......................................................  111       0.404
.......................UGCUAUCUGUGAUUGAGGGAC.......................................................  108       0.315
.......................UGCUAUCUGUGAUUGAGGGA........................................................  60        0.184
.......................UGCUAUCUGUGAUUGAGGGACAU.....................................................  30        0.0819
.......................UGCUAUCUGUGAUUGAGGG.........................................................  14        0.0531
.......................UGCUAUCUGUGAUUGAGGGACAUG....................................................  1         0.00451
.......................UGCUAUCUGUGAUUGAGG..........................................................  1         0.00975
........................GCUAUCUGUGAUUGAGGGAC.......................................................  3         0.0123
........................GCUAUCUGUGAUUGAGG..........................................................  1         0.00847
........................GCUAUCUGUGAUUGAGGGA........................................................  1         0.00105
.........................CUAUCUGUGAUUGAGGGAC.......................................................  1         0.00575
..........................UAUCUGUGAUUGAGGGACA......................................................  1         0.00451
..........................UAUCUGUGAUUGAGGGACAUGGUCAA...............................................  1         0.00238
...........................AUCUGUGAUUGAGGGACA......................................................  1         0.00952
.............................CUGUGAUUGAGGGACAUGGUCA................................................  1         0.00105
......................................AGGGACAUGGUCAAUGGAAUUG.......................................  1         0.00304
......................................AGGGACAUGGUCAAUGGAAUU........................................  1         0.00105
.........................................GACAUGGUCAAUGGAAUUG.......................................  5         0.0241
.........................................GACAUGGUCAAUGGAAUUGUC.....................................  2         0.00509
..........................................ACAUGGUCAAUGGAAUUGUCU....................................  2         0.00408
...........................................CAUGGUCAAUGGAAUUGUC.....................................  621       2.73
...........................................CAUGGUCAAUGGAAUUG.......................................  31        0.0992
...........................................CAUGGUCAAUGGAAUUGUCUC...................................  31        0.111
...........................................CAUGGUCAAUGGAAUUGUCU....................................  4         0.0117
...........................................CAUGGUCAAUGGAAUUGU......................................  1         0.0118
............................................AUGGUCAAUGGAAUUGUC.....................................  2         0.00642
........................................................AUUGUCUCACACAGAAAUCGCACCCGU................  1         0.0025
........................................................AUUGUCUCACACAGAAAUCGCACC...................  1         0.00322
...........................................................GUCUCACACAGAAAUCGCACCCG.................  1         0.00227
............................................................UCUCACACAGAAAUCGCACCCGU................  42936     264
............................................................UCUCACACAGAAAUCGCACCCGUC...............  42028     286
............................................................UCUCACACAGAAAUCGCACCCG.................  9350      37.3
............................................................UCUCACACAGAAAUCGCACCCGUCA..............  8030      45.6
............................................................UCUCACACAGAAAUCGCACCC..................  4120      13.2
............................................................UCUCACACAGAAAUCGCACC...................  3223      9.3
............................................................UCUCACACAGAAAUCGCAC....................  2253      7.76
............................................................UCUCACACAGAAAUCGC......................  354       10.3
............................................................UCUCACACAGAAAUCGCA.....................  68        2.53
............................................................UCUCACACAGAAAUCGCACCCGUCAC.............  37        0.112
............................................................UCUCACACAGAAAUCGCACCCGUCACC............  7         0.0278
.............................................................CUCACACAGAAAUCGCACCCGUC...............  387       2.63
.............................................................CUCACACAGAAAUCGCACCCGU................  294       1.9
.............................................................CUCACACAGAAAUCGCACCCGUCA..............  136       0.748
.............................................................CUCACACAGAAAUCGCACCCG.................  63        0.378
.............................................................CUCACACAGAAAUCGCACCC..................  41        0.142
.............................................................CUCACACAGAAAUCGCACC...................  17        0.0557
.............................................................CUCACACAGAAAUCGCAC....................  2         0.0829
.............................................................CUCACACAGAAAUCGCA.....................  1         0.0101
..............................................................UCACACAGAAAUCGCACCCGUCA..............  5570      24.8
..............................................................UCACACAGAAAUCGCACCCGUC...............  2543      11.9
..............................................................UCACACAGAAAUCGCACCCGU................  1381      6.91
..............................................................UCACACAGAAAUCGCACCC..................  459       1.46
..............................................................UCACACAGAAAUCGCACCCG.................  298       1.05
..............................................................UCACACAGAAAUCGCACCCGUCACC............  8         0.0322
..............................................................UCACACAGAAAUCGCACCCGUCAC.............  8         0.031
..............................................................UCACACAGAAAUCGCACC...................  3         0.0144
..............................................................UCACACAGAAAUCGCACCCGUCACCU...........  1         0.00259
...............................................................CACACAGAAAUCGCACCCGUCA..............  58        0.161
...............................................................CACACAGAAAUCGCACCCGUC...............  49        0.803
...............................................................CACACAGAAAUCGCACCCGU................  23        0.136
...............................................................CACACAGAAAUCGCACCCG.................  7         0.0206
...............................................................CACACAGAAAUCGCACCC..................  1         0.0123
...............................................................CACACAGAAAUCGCACC...................  1         0.0101
...............................................................CACACAGAAAUCGCACCCGUCAC.............  1         0.00259
................................................................ACACAGAAAUCGCACCCGUC...............  111       0.857
................................................................ACACAGAAAUCGCACCCGUCA..............  107       0.607
................................................................ACACAGAAAUCGCACCCGU................  86        0.445
................................................................ACACAGAAAUCGCACCCG.................  12        0.0398
................................................................ACACAGAAAUCGCACCC..................  2         0.0127
................................................................ACACAGAAAUCGCACCCGUCAC.............  1         0.00465
.................................................................CACAGAAAUCGCACCCGUC...............  14        0.992
.................................................................CACAGAAAUCGCACCCGU................  8         0.162
.................................................................CACAGAAAUCGCACCCGUCA..............  3         0.00711
..................................................................ACAGAAAUCGCACCCGUC...............  52        1.12
..................................................................ACAGAAAUCGCACCCGU................  30        0.443
..................................................................ACAGAAAUCGCACCCGUCA..............  6         0.0215
...................................................................CAGAAAUCGCACCCGUC...............  13        0.188
...................................................................CAGAAAUCGCACCCGUCA..............  5         0.0276
....................................................................AGAAAUCGCACCCGUCA..............  6         0.101
GAAAAUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUCAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCUGA
......((((.((((((((.((((((..((((((.....((((((...((....))..)))))).))))))....)))))).))))))))))))..... (-48.90)

miRBase

Deep sequencing reads for mature sequence MIMAT0000590

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).