miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000555
Stem-loop ID	mmu-mir-324
Mature ID	mmu-miR-324-5p
Reads	mmu-miR-324-5p mmu-miR-324-3p Count RPM (mean number of reads per million) AACUGACUAUGCCUCCU........................................................................ 1 0.0101 .................CGCAUCCCCUAGGGCAUUGGUGU................................................. 9802 126 .................CGCAUCCCCUAGGGCAUUGGUG.................................................. 1852 20.8 .................CGCAUCCCCUAGGGCAUUGGU................................................... 1812 14.7 .................CGCAUCCCCUAGGGCAUUGG.................................................... 532 4.04 .................CGCAUCCCCUAGGGCAUUGGUGUA................................................ 329 2.98 .................CGCAUCCCCUAGGGCAUUG..................................................... 285 1 .................CGCAUCCCCUAGGGCAUUGGUGUAA............................................... 189 1.79 .................CGCAUCCCCUAGGGCAUUGGUGUAAA.............................................. 21 0.267 .................CGCAUCCCCUAGGGCAU....................................................... 4 0.0436 .................CGCAUCCCCUAGGGCAUUGGUGUAAAG............................................. 1 0.00257 .................CGCAUCCCCUAGGGCAUU...................................................... 1 0.0112 ..................GCAUCCCCUAGGGCAUUGGUGU................................................. 176 1.67 ..................GCAUCCCCUAGGGCAUUGGU................................................... 27 0.353 ..................GCAUCCCCUAGGGCAUUGGUG.................................................. 11 0.133 ..................GCAUCCCCUAGGGCAUUGGUGUA................................................ 7 0.0381 ..................GCAUCCCCUAGGGCAUUGG.................................................... 2 0.0135 ..................GCAUCCCCUAGGGCAUUGGUGUAA............................................... 1 0.00257 ...................CAUCCCCUAGGGCAUUGGUGU................................................. 67 0.755 ...................CAUCCCCUAGGGCAUUGGUG.................................................. 6 0.0385 ...................CAUCCCCUAGGGCAUUGGU................................................... 5 0.0331 ....................AUCCCCUAGGGCAUUGGUGU................................................. 119 1.42 ....................AUCCCCUAGGGCAUUGGUG.................................................. 24 0.233 ....................AUCCCCUAGGGCAUUGGU................................................... 12 0.179 ....................AUCCCCUAGGGCAUUGGUGUA................................................ 5 0.103 ....................AUCCCCUAGGGCAUUGG.................................................... 2 0.0107 .....................UCCCCUAGGGCAUUGGUGU................................................. 21 0.443 .....................UCCCCUAGGGCAUUGGU................................................... 3 0.0318 .....................UCCCCUAGGGCAUUGGUGUA................................................ 1 0.00847 .....................UCCCCUAGGGCAUUGGUG.................................................. 1 0.00227 ......................CCCCUAGGGCAUUGGUGU................................................. 24 0.322 ......................CCCCUAGGGCAUUGGUGUA................................................ 3 0.0254 ......................CCCCUAGGGCAUUGGUGUAA............................................... 1 0.00575 .......................CCCUAGGGCAUUGGUGU................................................. 54 0.73 .......................CCCUAGGGCAUUGGUGUAA............................................... 2 0.0239 .......................CCCUAGGGCAUUGGUGUAAAG............................................. 1 0.00501 .....................................UGUAAAGCUGGAGACCC................................... 7 0.0554 .....................................UGUAAAGCUGGAGACCCACUGCC............................. 1 0.00741 ........................................AAAGCUGGAGACCCACUGCCCCA.......................... 1 0.00323 ...................................................CCCACUGCCCCAGGUGCUGCUGG............... 1 0.00394 ....................................................CCACUGCCCCAGGUGCUGCUGG............... 1015 12.5 ....................................................CCACUGCCCCAGGUGCUGCUG................ 319 1.94 ....................................................CCACUGCCCCAGGUGCUGCU................. 119 0.973 ....................................................CCACUGCCCCAGGUGCUGC.................. 25 0.108 ....................................................CCACUGCCCCAGGUGCUGCUGGG.............. 5 0.0379 ....................................................CCACUGCCCCAGGUGCUG................... 1 0.0101 ....................................................CCACUGCCCCAGGUGCU.................... 1 0.0104 .....................................................CACUGCCCCAGGUGCUGCUGG............... 51 0.4 .....................................................CACUGCCCCAGGUGCUGCUG................ 6 0.0308 .....................................................CACUGCCCCAGGUGCUGCU................. 5 0.0127 ......................................................ACUGCCCCAGGUGCUGCUGG............... 1756 8.04 ......................................................ACUGCCCCAGGUGCUGCUG................ 236 0.965 ......................................................ACUGCCCCAGGUGCUGCUGGG.............. 29 0.158 ......................................................ACUGCCCCAGGUGCUGCU................. 15 0.0955 ......................................................ACUGCCCCAGGUGCUGC.................. 3 0.0284 .......................................................CUGCCCCAGGUGCUGCUGG............... 18 0.0673 .......................................................CUGCCCCAGGUGCUGCUG................ 2 0.0482 .......................................................CUGCCCCAGGUGCUGCU................. 1 0.00227 ........................................................UGCCCCAGGUGCUGCUGG............... 1 0.00227 .........................................................GCCCCAGGUGCUGCUGG............... 4 0.0412 AACUGACUAUGCCUCCUCGCAUCCCCUAGGGCAUUGGUGUAAAGCUGGAGACCCACUGCCCCAGGUGCUGCUGGGGGUUGUAGUCUGAC ....((((((..(((((.(((.(.(((.(((((.(((.((..........))))).))))).))).).))).)))))..)))))).... (-37.90)

                 mmu-miR-324-5p                   mmu-miR-324-3p                           Count     RPM (mean number of reads per million)
AACUGACUAUGCCUCCU........................................................................  1         0.0101
.................CGCAUCCCCUAGGGCAUUGGUGU.................................................  9802      126
.................CGCAUCCCCUAGGGCAUUGGUG..................................................  1852      20.8
.................CGCAUCCCCUAGGGCAUUGGU...................................................  1812      14.7
.................CGCAUCCCCUAGGGCAUUGG....................................................  532       4.04
.................CGCAUCCCCUAGGGCAUUGGUGUA................................................  329       2.98
.................CGCAUCCCCUAGGGCAUUG.....................................................  285       1
.................CGCAUCCCCUAGGGCAUUGGUGUAA...............................................  189       1.79
.................CGCAUCCCCUAGGGCAUUGGUGUAAA..............................................  21        0.267
.................CGCAUCCCCUAGGGCAU.......................................................  4         0.0436
.................CGCAUCCCCUAGGGCAUUGGUGUAAAG.............................................  1         0.00257
.................CGCAUCCCCUAGGGCAUU......................................................  1         0.0112
..................GCAUCCCCUAGGGCAUUGGUGU.................................................  176       1.67
..................GCAUCCCCUAGGGCAUUGGU...................................................  27        0.353
..................GCAUCCCCUAGGGCAUUGGUG..................................................  11        0.133
..................GCAUCCCCUAGGGCAUUGGUGUA................................................  7         0.0381
..................GCAUCCCCUAGGGCAUUGG....................................................  2         0.0135
..................GCAUCCCCUAGGGCAUUGGUGUAA...............................................  1         0.00257
...................CAUCCCCUAGGGCAUUGGUGU.................................................  67        0.755
...................CAUCCCCUAGGGCAUUGGUG..................................................  6         0.0385
...................CAUCCCCUAGGGCAUUGGU...................................................  5         0.0331
....................AUCCCCUAGGGCAUUGGUGU.................................................  119       1.42
....................AUCCCCUAGGGCAUUGGUG..................................................  24        0.233
....................AUCCCCUAGGGCAUUGGU...................................................  12        0.179
....................AUCCCCUAGGGCAUUGGUGUA................................................  5         0.103
....................AUCCCCUAGGGCAUUGG....................................................  2         0.0107
.....................UCCCCUAGGGCAUUGGUGU.................................................  21        0.443
.....................UCCCCUAGGGCAUUGGU...................................................  3         0.0318
.....................UCCCCUAGGGCAUUGGUGUA................................................  1         0.00847
.....................UCCCCUAGGGCAUUGGUG..................................................  1         0.00227
......................CCCCUAGGGCAUUGGUGU.................................................  24        0.322
......................CCCCUAGGGCAUUGGUGUA................................................  3         0.0254
......................CCCCUAGGGCAUUGGUGUAA...............................................  1         0.00575
.......................CCCUAGGGCAUUGGUGU.................................................  54        0.73
.......................CCCUAGGGCAUUGGUGUAA...............................................  2         0.0239
.......................CCCUAGGGCAUUGGUGUAAAG.............................................  1         0.00501
.....................................UGUAAAGCUGGAGACCC...................................  7         0.0554
.....................................UGUAAAGCUGGAGACCCACUGCC.............................  1         0.00741
........................................AAAGCUGGAGACCCACUGCCCCA..........................  1         0.00323
...................................................CCCACUGCCCCAGGUGCUGCUGG...............  1         0.00394
....................................................CCACUGCCCCAGGUGCUGCUGG...............  1015      12.5
....................................................CCACUGCCCCAGGUGCUGCUG................  319       1.94
....................................................CCACUGCCCCAGGUGCUGCU.................  119       0.973
....................................................CCACUGCCCCAGGUGCUGC..................  25        0.108
....................................................CCACUGCCCCAGGUGCUGCUGGG..............  5         0.0379
....................................................CCACUGCCCCAGGUGCUG...................  1         0.0101
....................................................CCACUGCCCCAGGUGCU....................  1         0.0104
.....................................................CACUGCCCCAGGUGCUGCUGG...............  51        0.4
.....................................................CACUGCCCCAGGUGCUGCUG................  6         0.0308
.....................................................CACUGCCCCAGGUGCUGCU.................  5         0.0127
......................................................ACUGCCCCAGGUGCUGCUGG...............  1756      8.04
......................................................ACUGCCCCAGGUGCUGCUG................  236       0.965
......................................................ACUGCCCCAGGUGCUGCUGGG..............  29        0.158
......................................................ACUGCCCCAGGUGCUGCU.................  15        0.0955
......................................................ACUGCCCCAGGUGCUGC..................  3         0.0284
.......................................................CUGCCCCAGGUGCUGCUGG...............  18        0.0673
.......................................................CUGCCCCAGGUGCUGCUG................  2         0.0482
.......................................................CUGCCCCAGGUGCUGCU.................  1         0.00227
........................................................UGCCCCAGGUGCUGCUGG...............  1         0.00227
.........................................................GCCCCAGGUGCUGCUGG...............  4         0.0412
AACUGACUAUGCCUCCUCGCAUCCCCUAGGGCAUUGGUGUAAAGCUGGAGACCCACUGCCCCAGGUGCUGCUGGGGGUUGUAGUCUGAC
....((((((..(((((.(((.(.(((.(((((.(((.((..........))))).))))).))).).))).)))))..)))))).... (-37.90)

miRBase

Deep sequencing reads for mature sequence MIMAT0000555

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).