Deep sequencing reads for mature sequence MIMAT0000373

Stem-loop ID mmu-mir-295
Mature ID mmu-miR-295-3p
Reads 
      mmu-miR-295-5p                      mmu-miR-295-3p               Count     RPM (mean number of reads per million)
.....GACUCAAAUGUGGGGCACACUUCU........................................  126       1.69
.....GACUCAAAUGUGGGGCACACUUC.........................................  66        0.948
.....GACUCAAAUGUGGGGCACACUU..........................................  34        0.459
.....GACUCAAAUGUGGGGCACACU...........................................  9         0.119
.....GACUCAAAUGUGGGGCACAC............................................  2         0.0264
.....GACUCAAAUGUGGGGCACA.............................................  1         0.0132
......ACUCAAAUGUGGGGCACACUUCU........................................  3499      47.6
......ACUCAAAUGUGGGGCACACUUC.........................................  582       7.87
......ACUCAAAUGUGGGGCACACUU..........................................  404       5.5
......ACUCAAAUGUGGGGCACACU...........................................  117       1.63
......ACUCAAAUGUGGGGCACAC............................................  16        0.211
......ACUCAAAUGUGGGGCACACUUCUG.......................................  12        0.159
......ACUCAAAUGUGGGGCACA.............................................  2         0.249
......ACUCAAAUGUGGGGCAC..............................................  1         0.0185
.......CUCAAAUGUGGGGCACACUUCU........................................  25        0.33
.......CUCAAAUGUGGGGCACACUUC.........................................  3         0.0396
.......CUCAAAUGUGGGGCACACUU..........................................  3         0.086
........UCAAAUGUGGGGCACACUUCU........................................  10        0.275
........UCAAAUGUGGGGCACACUU..........................................  3         0.102
........UCAAAUGUGGGGCACACU...........................................  1         0.0132
.........CAAAUGUGGGGCACACUUCU........................................  3         0.0396
.........CAAAUGUGGGGCACACUUC.........................................  1         0.0132
..........AAAUGUGGGGCACACUUCU........................................  4         0.0623
..........AAAUGUGGGGCACACUUC.........................................  1         0.0132
............AUGUGGGGCACACUUCU........................................  3         0.068
.......................ACUUCUGGACUGUACAUAGAAAGU......................  1         0.0132
..........................UCUGGACUGUACAUAGAAA........................  1         0.0132
..........................UCUGGACUGUACAUAGAAAG.......................  1         0.0132
..........................UCUGGACUGUACAUAGAAAGUG.....................  1         0.0132
............................UGGACUGUACAUAGAAAGUGCUAC.................  2         0.0264
............................UGGACUGUACAUAGAAAGUGCU...................  2         0.0264
............................UGGACUGUACAUAGAAAGUGCUA..................  1         0.0132
..........................................AAAGUGCUACUACUUUUGAGUCU....  29529     467
..........................................AAAGUGCUACUACUUUUGAGUC.....  3004      62
..........................................AAAGUGCUACUACUUUUGAGU......  1456      31
..........................................AAAGUGCUACUACUUUUGAGUCUC...  869       12.6
..........................................AAAGUGCUACUACUUUUGAG.......  738       12.5
..........................................AAAGUGCUACUACUUUUGAGUCUCU..  229       3.12
..........................................AAAGUGCUACUACUUUUGA........  49        0.815
..........................................AAAGUGCUACUACUUUUGAGUCUCUC.  9         0.119
..........................................AAAGUGCUACUACUUUU..........  2         0.037
...........................................AAGUGCUACUACUUUUGAGUCU....  25698     369
...........................................AAGUGCUACUACUUUUGAGUC.....  1149      18.7
...........................................AAGUGCUACUACUUUUGAGUCUC...  1127      16.2
...........................................AAGUGCUACUACUUUUGAGUCUCU..  801       11.4
...........................................AAGUGCUACUACUUUUGAG.......  324       4.64
...........................................AAGUGCUACUACUUUUGAGU......  228       3.9
...........................................AAGUGCUACUACUUUUGAGUCUCUC.  25        0.33
...........................................AAGUGCUACUACUUUUGA........  17        0.349
...........................................AAGUGCUACUACUUUUGAGUCUCUCC  1         0.0132
............................................AGUGCUACUACUUUUGAGUCU....  130       1.86
............................................AGUGCUACUACUUUUGAGUC.....  10        0.132
............................................AGUGCUACUACUUUUGAGUCUCU..  6         0.0715
............................................AGUGCUACUACUUUUGAGUCUC...  4         0.109
............................................AGUGCUACUACUUUUGAG.......  3         0.0396
............................................AGUGCUACUACUUUUGAGU......  1         0.0132
.............................................GUGCUACUACUUUUGAGUCU....  18        0.464
.............................................GUGCUACUACUUUUGAGUC.....  5         0.0661
.............................................GUGCUACUACUUUUGAGUCUCU..  5         0.0714
.............................................GUGCUACUACUUUUGAGUCUC...  2         0.0174
.............................................GUGCUACUACUUUUGAG.......  1         0.0132
..............................................UGCUACUACUUUUGAGUCU....  5         0.0819
...............................................GCUACUACUUUUGAGUCU....  1         0.0185
................................................CUACUACUUUUGAGUCU....  9         0.22
GGUGAGACUCAAAUGUGGGGCACACUUCUGGACUGUACAUAGAAAGUGCUACUACUUUUGAGUCUCUCC
((.((((((((((.(((((((((..(((((.........))))).))))).)))).)))))))))).)) (-30.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000032 1testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 8testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 4testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000042 1whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 1whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000045 8whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 4whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 6whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 8whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 4whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 5whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 3whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 14whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 5embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 26embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 23embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 1embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 714embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 3071embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 2722embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 208embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 556embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 1673embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1716embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000217 2bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000222 2spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 3spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 69peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 1lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 1bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 5bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000232 3peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000236 6spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000238 1spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000242 1lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 11lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000246 1lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 60488 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000252 1liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000255 1skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 1skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 1salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 2testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 1ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).