miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000371
Stem-loop ID	mmu-mir-293
Mature ID	mmu-miR-293-3p
Reads	mmu-miR-293-5p mmu-miR-293-3p Count RPM (mean number of reads per million) ............UACUCAAACUGUGUGACAUUUU.............................................. 8 0.119 ............UACUCAAACUGUGUGACAUUU............................................... 7 0.104 .............ACUCAAACUGUGUGACAUUUU.............................................. 10997 166 .............ACUCAAACUGUGUGACAUUU............................................... 904 13.9 .............ACUCAAACUGUGUGACAUU................................................ 91 1.48 .............ACUCAAACUGUGUGACAU................................................. 36 0.723 .............ACUCAAACUGUGUGACAUUUUG............................................. 27 0.4 .............ACUCAAACUGUGUGACA.................................................. 10 0.235 .............ACUCAAACUGUGUGACAUUUUGU............................................ 7 0.11 .............ACUCAAACUGUGUGACAUUUUGUU........................................... 7 0.137 .............ACUCAAACUGUGUGACAUUUUGUUC.......................................... 3 0.0445 .............ACUCAAACUGUGUGACAUUUUGUUCU......................................... 1 0.0148 ..............CUCAAACUGUGUGACAUUUU.............................................. 118 1.76 ..............CUCAAACUGUGUGACAUUUUGU............................................ 16 0.237 ..............CUCAAACUGUGUGACAUUU............................................... 10 0.148 ..............CUCAAACUGUGUGACAUUUUG............................................. 5 0.0741 ...............UCAAACUGUGUGACAUUUU.............................................. 8 0.125 .................AAACUGUGUGACAUUUU.............................................. 8 0.119 .................AAACUGUGUGACAUUUUGU............................................ 1 0.0148 ..................................GUUCUUUGUAAGAAGUGCCGC......................... 1 0.0148 ............................................AGAAGUGCCGCAGAGUUUGUA............... 1 0.0148 .............................................GAAGUGCCGCAGAGUUUGUA............... 6 0.089 .............................................GAAGUGCCGCAGAGUUUGU................ 5 0.0741 .............................................GAAGUGCCGCAGAGUUUGUAGU............. 5 0.0741 .............................................GAAGUGCCGCAGAGUUUGUAG.............. 5 0.0741 .............................................GAAGUGCCGCAGAGUUUG................. 3 0.0445 .............................................GAAGUGCCGCAGAGUUUGUAGUGU........... 2 0.0297 .............................................GAAGUGCCGCAGAGUUUGUAGUG............ 1 0.0148 ..............................................AAGUGCCGCAGAGUUUGUAGUGU........... 368 5.66 ..............................................AAGUGCCGCAGAGUUUGUA............... 52 0.771 ..............................................AAGUGCCGCAGAGUUUGUAGUG............ 36 0.559 ..............................................AAGUGCCGCAGAGUUUGUAG.............. 29 0.43 ..............................................AAGUGCCGCAGAGUUUGUAGU............. 15 0.222 ...............................................AGUGCCGCAGAGUUUGUAGUGU........... 97759 1.53e+03 ...............................................AGUGCCGCAGAGUUUGUAGUG............ 7189 110 ...............................................AGUGCCGCAGAGUUUGUAG.............. 5886 87.3 ...............................................AGUGCCGCAGAGUUUGUAGUGUU.......... 5407 81.5 ...............................................AGUGCCGCAGAGUUUGUAGU............. 4230 63.8 ...............................................AGUGCCGCAGAGUUUGUAGUGUUG......... 13 0.193 ...............................................AGUGCCGCAGAGUUUGUAGUGUUGC........ 8 0.119 ...............................................AGUGCCGCAGAGUUUGUA............... 4 0.0831 ...............................................AGUGCCGCAGAGUUUGU................ 1 0.0208 ................................................GUGCCGCAGAGUUUGUAGUGU........... 192 2.87 ................................................GUGCCGCAGAGUUUGUAGUGUU.......... 15 0.214 ................................................GUGCCGCAGAGUUUGUAGUG............ 12 0.178 ................................................GUGCCGCAGAGUUUGUAG.............. 5 0.0741 ................................................GUGCCGCAGAGUUUGUAGU............. 5 0.0801 .................................................UGCCGCAGAGUUUGUAGUGU........... 26 0.556 .................................................UGCCGCAGAGUUUGUAGUGUU.......... 3 0.0445 .................................................UGCCGCAGAGUUUGUAGUG............ 2 0.0297 .................................................UGCCGCAGAGUUUGUAGUGUUGC........ 1 0.0148 .................................................UGCCGCAGAGUUUGUAGUGUUG......... 1 0.0148 ..................................................GCCGCAGAGUUUGUAGUGU........... 18 0.354 ...................................................CCGCAGAGUUUGUAGUGU........... 20 0.328 ...................................................CCGCAGAGUUUGUAGUGUU.......... 2 0.0297 ....................................................CGCAGAGUUUGUAGUGU........... 12 0.385 .....................................................GCAGAGUUUGUAGUGUU.......... 3 0.0445 UUCAAUCUGUGGUACUCAAACUGUGUGACAUUUUGUUCUUUGUAAGAAGUGCCGCAGAGUUUGUAGUGUUGCCGAUUGAG .((((((.((..((((((((((.((((.((((((...........)))))).)))).)))))).))))..)).)))))). (-31.30)

             mmu-miR-293-5p                    mmu-miR-293-3p                      Count     RPM (mean number of reads per million)
............UACUCAAACUGUGUGACAUUUU..............................................  8         0.119
............UACUCAAACUGUGUGACAUUU...............................................  7         0.104
.............ACUCAAACUGUGUGACAUUUU..............................................  10997     166
.............ACUCAAACUGUGUGACAUUU...............................................  904       13.9
.............ACUCAAACUGUGUGACAUU................................................  91        1.48
.............ACUCAAACUGUGUGACAU.................................................  36        0.723
.............ACUCAAACUGUGUGACAUUUUG.............................................  27        0.4
.............ACUCAAACUGUGUGACA..................................................  10        0.235
.............ACUCAAACUGUGUGACAUUUUGU............................................  7         0.11
.............ACUCAAACUGUGUGACAUUUUGUU...........................................  7         0.137
.............ACUCAAACUGUGUGACAUUUUGUUC..........................................  3         0.0445
.............ACUCAAACUGUGUGACAUUUUGUUCU.........................................  1         0.0148
..............CUCAAACUGUGUGACAUUUU..............................................  118       1.76
..............CUCAAACUGUGUGACAUUUUGU............................................  16        0.237
..............CUCAAACUGUGUGACAUUU...............................................  10        0.148
..............CUCAAACUGUGUGACAUUUUG.............................................  5         0.0741
...............UCAAACUGUGUGACAUUUU..............................................  8         0.125
.................AAACUGUGUGACAUUUU..............................................  8         0.119
.................AAACUGUGUGACAUUUUGU............................................  1         0.0148
..................................GUUCUUUGUAAGAAGUGCCGC.........................  1         0.0148
............................................AGAAGUGCCGCAGAGUUUGUA...............  1         0.0148
.............................................GAAGUGCCGCAGAGUUUGUA...............  6         0.089
.............................................GAAGUGCCGCAGAGUUUGU................  5         0.0741
.............................................GAAGUGCCGCAGAGUUUGUAGU.............  5         0.0741
.............................................GAAGUGCCGCAGAGUUUGUAG..............  5         0.0741
.............................................GAAGUGCCGCAGAGUUUG.................  3         0.0445
.............................................GAAGUGCCGCAGAGUUUGUAGUGU...........  2         0.0297
.............................................GAAGUGCCGCAGAGUUUGUAGUG............  1         0.0148
..............................................AAGUGCCGCAGAGUUUGUAGUGU...........  368       5.66
..............................................AAGUGCCGCAGAGUUUGUA...............  52        0.771
..............................................AAGUGCCGCAGAGUUUGUAGUG............  36        0.559
..............................................AAGUGCCGCAGAGUUUGUAG..............  29        0.43
..............................................AAGUGCCGCAGAGUUUGUAGU.............  15        0.222
...............................................AGUGCCGCAGAGUUUGUAGUGU...........  97759     1.53e+03
...............................................AGUGCCGCAGAGUUUGUAGUG............  7189      110
...............................................AGUGCCGCAGAGUUUGUAG..............  5886      87.3
...............................................AGUGCCGCAGAGUUUGUAGUGUU..........  5407      81.5
...............................................AGUGCCGCAGAGUUUGUAGU.............  4230      63.8
...............................................AGUGCCGCAGAGUUUGUAGUGUUG.........  13        0.193
...............................................AGUGCCGCAGAGUUUGUAGUGUUGC........  8         0.119
...............................................AGUGCCGCAGAGUUUGUA...............  4         0.0831
...............................................AGUGCCGCAGAGUUUGU................  1         0.0208
................................................GUGCCGCAGAGUUUGUAGUGU...........  192       2.87
................................................GUGCCGCAGAGUUUGUAGUGUU..........  15        0.214
................................................GUGCCGCAGAGUUUGUAGUG............  12        0.178
................................................GUGCCGCAGAGUUUGUAG..............  5         0.0741
................................................GUGCCGCAGAGUUUGUAGU.............  5         0.0801
.................................................UGCCGCAGAGUUUGUAGUGU...........  26        0.556
.................................................UGCCGCAGAGUUUGUAGUGUU..........  3         0.0445
.................................................UGCCGCAGAGUUUGUAGUG............  2         0.0297
.................................................UGCCGCAGAGUUUGUAGUGUUGC........  1         0.0148
.................................................UGCCGCAGAGUUUGUAGUGUUG.........  1         0.0148
..................................................GCCGCAGAGUUUGUAGUGU...........  18        0.354
...................................................CCGCAGAGUUUGUAGUGU...........  20        0.328
...................................................CCGCAGAGUUUGUAGUGUU..........  2         0.0297
....................................................CGCAGAGUUUGUAGUGU...........  12        0.385
.....................................................GCAGAGUUUGUAGUGUU..........  3         0.0445
UUCAAUCUGUGGUACUCAAACUGUGUGACAUUUUGUUCUUUGUAAGAAGUGCCGCAGAGUUUGUAGUGUUGCCGAUUGAG
.((((((.((..((((((((((.((((.((((((...........)))))).)))).)))))).))))..)).)))))). (-31.30)

miRBase

Deep sequencing reads for mature sequence MIMAT0000371

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).