miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000368
Stem-loop ID	mmu-mir-291a
Mature ID	mmu-miR-291a-3p
Reads	mmu-miR-291a-5p mmu-miR-291a-3p Count RPM (mean number of reads per million) ............CCAUCAAAGUGGAGGCCCUCUCU............................................... 96 1.28 ............CCAUCAAAGUGGAGGCCCUCU................................................. 62 0.625 ............CCAUCAAAGUGGAGGCCCUCUC................................................ 34 0.441 ............CCAUCAAAGUGGAGGCCCUCUCUU.............................................. 14 0.185 ............CCAUCAAAGUGGAGGCCCU................................................... 6 0.0793 ............CCAUCAAAGUGGAGGCCC.................................................... 2 0.0264 .............CAUCAAAGUGGAGGCCCUCUCU............................................... 22623 302 .............CAUCAAAGUGGAGGCCCUCUCUU.............................................. 9339 126 .............CAUCAAAGUGGAGGCCCUCUC................................................ 5461 72.3 .............CAUCAAAGUGGAGGCCCUCU................................................. 2445 32.5 .............CAUCAAAGUGGAGGCCCUC.................................................. 985 13.1 .............CAUCAAAGUGGAGGCCCU................................................... 374 4.95 .............CAUCAAAGUGGAGGCCC.................................................... 230 3.05 .............CAUCAAAGUGGAGGCCCUCUCUUG............................................. 82 1.1 .............CAUCAAAGUGGAGGCCCUCUCUUGA............................................ 14 0.196 ..............AUCAAAGUGGAGGCCCUCUCUU.............................................. 177 2.61 ..............AUCAAAGUGGAGGCCCUCUCU............................................... 154 2.1 ..............AUCAAAGUGGAGGCCCUCUC................................................ 29 0.383 ..............AUCAAAGUGGAGGCCCUCU................................................. 9 0.11 ..............AUCAAAGUGGAGGCCCUC.................................................. 7 0.0925 ..............AUCAAAGUGGAGGCCCUCUCUUG............................................. 3 0.0396 ..............AUCAAAGUGGAGGCCCUCUCUUGA............................................ 1 0.0185 ...............UCAAAGUGGAGGCCCUCUC................................................ 8 0.106 ...............UCAAAGUGGAGGCCCUCUCUU.............................................. 5 0.183 ...............UCAAAGUGGAGGCCCUCUCU............................................... 4 0.0623 ...............UCAAAGUGGAGGCCCUC.................................................. 1 0.0132 ...............UCAAAGUGGAGGCCCUCUCUUGA............................................ 1 0.0132 ................CAAAGUGGAGGCCCUCUCU............................................... 3 0.0396 ................CAAAGUGGAGGCCCUCUCUU.............................................. 1 0.0185 .................AAAGUGGAGGCCCUCUCU............................................... 59 0.859 .................AAAGUGGAGGCCCUCUCUU.............................................. 31 0.499 .................AAAGUGGAGGCCCUCUCUUG............................................. 1 0.0185 ..................AAGUGGAGGCCCUCUCUUGAG........................................... 1 0.0211 ...............................CUCUUGAGCCUGAAUGAGA................................ 1 0.0132 ...........................................AAUGAGAAAGUGCUUCCACUUU................. 1 0.0211 ................................................GAAAGUGCUUCCACUUUGUGUGC........... 89 1.59 ................................................GAAAGUGCUUCCACUUUGUGU............. 76 1.13 ................................................GAAAGUGCUUCCACUUUGUGUG............ 42 0.833 ................................................GAAAGUGCUUCCACUUUGUG.............. 2 0.0264 .................................................AAAGUGCUUCCACUUUGUGUGC........... 14759 266 .................................................AAAGUGCUUCCACUUUGUGUG............ 1350 31.1 .................................................AAAGUGCUUCCACUUUGUGUGCC.......... 211 3.12 .................................................AAAGUGCUUCCACUUUGUGU............. 160 2.61 .................................................AAAGUGCUUCCACUUUGUG.............. 99 1.4 .................................................AAAGUGCUUCCACUUUGUGUGCCA......... 61 0.819 .................................................AAAGUGCUUCCACUUUG................ 4 0.128 ..................................................AAGUGCUUCCACUUUGUGUGC........... 727 11.6 ..................................................AAGUGCUUCCACUUUGUGUGCC.......... 76 1.07 ..................................................AAGUGCUUCCACUUUGUGUG............ 70 1.4 ..................................................AAGUGCUUCCACUUUGUGUGCCA......... 20 0.264 ..................................................AAGUGCUUCCACUUUGUGU............. 9 0.119 ..................................................AAGUGCUUCCACUUUGUG.............. 4 0.0685 ...................................................AGUGCUUCCACUUUGUGUGC........... 5 0.0661 ....................................................GUGCUUCCACUUUGUGUGC........... 6 0.142 .....................................................UGCUUCCACUUUGUGUGC........... 1 0.0185 ......................................................GCUUCCACUUUGUGUGC........... 3 0.0597 CCUAUGUAGCGGCCAUCAAAGUGGAGGCCCUCUCUUGAGCCUGAAUGAGAAAGUGCUUCCACUUUGUGUGCCACUGCAUGGG (((((((((.(((((.((((((((((((.((.((((..........)))).)).)))))))))))))).))).))))))))) (-44.30)

            mmu-miR-291a-5p                     mmu-miR-291a-3p                      Count     RPM (mean number of reads per million)
............CCAUCAAAGUGGAGGCCCUCUCU...............................................  96        1.28
............CCAUCAAAGUGGAGGCCCUCU.................................................  62        0.625
............CCAUCAAAGUGGAGGCCCUCUC................................................  34        0.441
............CCAUCAAAGUGGAGGCCCUCUCUU..............................................  14        0.185
............CCAUCAAAGUGGAGGCCCU...................................................  6         0.0793
............CCAUCAAAGUGGAGGCCC....................................................  2         0.0264
.............CAUCAAAGUGGAGGCCCUCUCU...............................................  22623     302
.............CAUCAAAGUGGAGGCCCUCUCUU..............................................  9339      126
.............CAUCAAAGUGGAGGCCCUCUC................................................  5461      72.3
.............CAUCAAAGUGGAGGCCCUCU.................................................  2445      32.5
.............CAUCAAAGUGGAGGCCCUC..................................................  985       13.1
.............CAUCAAAGUGGAGGCCCU...................................................  374       4.95
.............CAUCAAAGUGGAGGCCC....................................................  230       3.05
.............CAUCAAAGUGGAGGCCCUCUCUUG.............................................  82        1.1
.............CAUCAAAGUGGAGGCCCUCUCUUGA............................................  14        0.196
..............AUCAAAGUGGAGGCCCUCUCUU..............................................  177       2.61
..............AUCAAAGUGGAGGCCCUCUCU...............................................  154       2.1
..............AUCAAAGUGGAGGCCCUCUC................................................  29        0.383
..............AUCAAAGUGGAGGCCCUCU.................................................  9         0.11
..............AUCAAAGUGGAGGCCCUC..................................................  7         0.0925
..............AUCAAAGUGGAGGCCCUCUCUUG.............................................  3         0.0396
..............AUCAAAGUGGAGGCCCUCUCUUGA............................................  1         0.0185
...............UCAAAGUGGAGGCCCUCUC................................................  8         0.106
...............UCAAAGUGGAGGCCCUCUCUU..............................................  5         0.183
...............UCAAAGUGGAGGCCCUCUCU...............................................  4         0.0623
...............UCAAAGUGGAGGCCCUC..................................................  1         0.0132
...............UCAAAGUGGAGGCCCUCUCUUGA............................................  1         0.0132
................CAAAGUGGAGGCCCUCUCU...............................................  3         0.0396
................CAAAGUGGAGGCCCUCUCUU..............................................  1         0.0185
.................AAAGUGGAGGCCCUCUCU...............................................  59        0.859
.................AAAGUGGAGGCCCUCUCUU..............................................  31        0.499
.................AAAGUGGAGGCCCUCUCUUG.............................................  1         0.0185
..................AAGUGGAGGCCCUCUCUUGAG...........................................  1         0.0211
...............................CUCUUGAGCCUGAAUGAGA................................  1         0.0132
...........................................AAUGAGAAAGUGCUUCCACUUU.................  1         0.0211
................................................GAAAGUGCUUCCACUUUGUGUGC...........  89        1.59
................................................GAAAGUGCUUCCACUUUGUGU.............  76        1.13
................................................GAAAGUGCUUCCACUUUGUGUG............  42        0.833
................................................GAAAGUGCUUCCACUUUGUG..............  2         0.0264
.................................................AAAGUGCUUCCACUUUGUGUGC...........  14759     266
.................................................AAAGUGCUUCCACUUUGUGUG............  1350      31.1
.................................................AAAGUGCUUCCACUUUGUGUGCC..........  211       3.12
.................................................AAAGUGCUUCCACUUUGUGU.............  160       2.61
.................................................AAAGUGCUUCCACUUUGUG..............  99        1.4
.................................................AAAGUGCUUCCACUUUGUGUGCCA.........  61        0.819
.................................................AAAGUGCUUCCACUUUG................  4         0.128
..................................................AAGUGCUUCCACUUUGUGUGC...........  727       11.6
..................................................AAGUGCUUCCACUUUGUGUGCC..........  76        1.07
..................................................AAGUGCUUCCACUUUGUGUG............  70        1.4
..................................................AAGUGCUUCCACUUUGUGUGCCA.........  20        0.264
..................................................AAGUGCUUCCACUUUGUGU.............  9         0.119
..................................................AAGUGCUUCCACUUUGUG..............  4         0.0685
...................................................AGUGCUUCCACUUUGUGUGC...........  5         0.0661
....................................................GUGCUUCCACUUUGUGUGC...........  6         0.142
.....................................................UGCUUCCACUUUGUGUGC...........  1         0.0185
......................................................GCUUCCACUUUGUGUGC...........  3         0.0597
CCUAUGUAGCGGCCAUCAAAGUGGAGGCCCUCUCUUGAGCCUGAAUGAGAAAGUGCUUCCACUUUGUGUGCCACUGCAUGGG
(((((((((.(((((.((((((((((((.((.((((..........)))).)).)))))))))))))).))).))))))))) (-44.30)

miRBase

Deep sequencing reads for mature sequence MIMAT0000368

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).