Deep sequencing reads for mature sequence MIMAT0000285

Stem-loop ID cel-mir-230
Mature ID cel-miR-230-3p
Reads 
                cel-miR-230-5p                              cel-miR-230-3p                          Count     RPM (mean number of reads per million)
................ACUUGGUCGGCGAUUUAAUAUUA...........................................................  4         4.49
.................CUUGGUCGGCGAUUUAAUAUUA...........................................................  1         1.25
.......................................UCAGAACAUAGGAAAUUGUUA......................................  1         0.463
............................................................GUAUUAGUUGUGCGACCAGGAG................  62        80.6
............................................................GUAUUAGUUGUGCGACCAGGAGA...............  40        43.1
............................................................GUAUUAGUUGUGCGACCAGG..................  8         11.4
............................................................GUAUUAGUUGUGCGACCAGGA.................  2         3.8
............................................................GUAUUAGUUGUGCGACCAG...................  1         0.463
.............................................................UAUUAGUUGUGCGACCAGGAGA...............  1         0.463
.............................................................UAUUAGUUGUGCGACCAGGAG................  1         1.25
UUGAUGUAAUGCCGUCACUUGGUCGGCGAUUUAAUAUUAUCAGAACAUAGGAAAUUGUUAGUAUUAGUUGUGCGACCAGGAGACGGUAUUCGCAUAUU
...(((((((((((((.((((((((((((((.(((((((.(((...........))).))))))))))))).)))))))).))))))))).))))... (-37.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000024 185whole body GEO : GSM378784 [ de Wit E et al.]
ER0000000203 5adult GEO : GSM604032 strain: N2 wild-type, age: Day 0 [ de Lencastre A et al.]
ER0000000204 16adult GEO : GSM604033 strain: N2 wild-type, age: Day 10 [ de Lencastre A et al.]
ER0000000205 10adult GEO : GSM604034 strain: daf-2(e1379) mutant, age: Day 0 [ de Lencastre A et al.]
ER0000000206 5adult GEO : GSM604035 strain: daf-2(e1379) mutant, age: Day 10 [ de Lencastre A et al.]
ER0000000212 36whole body GEO : GSM139137 mixed-stage [ Ruby JG et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3
PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).