Deep sequencing reads for mature sequence MIMAT0000268

Stem-loop ID hsa-mir-211
Mature ID hsa-miR-211-5p
Reads 
                         hsa-miR-211-5p                      hsa-miR-211-3p                                     Count     RPM (mean number of reads per million)
.....UGGCCAUGUGACUUGUGGGC.....................................................................................  12        0.419
......GGCCAUGUGACUUGUGGGC.....................................................................................  4         0.132
.......GCCAUGUGACUUGUGGGC.....................................................................................  58        2.43
........CCAUGUGACUUGUGGGC.....................................................................................  53        2.27
........................CUUCCCUUUGUCAUCCUUCGCCU...............................................................  9         0.459
.........................UUCCCUUUGUCAUCCUUCGCCU...............................................................  21607     1.07e+03
.........................UUCCCUUUGUCAUCCUUCGCC................................................................  5554      338
.........................UUCCCUUUGUCAUCCUUCG..................................................................  1741      115
.........................UUCCCUUUGUCAUCCUUCGC.................................................................  621       37.1
.........................UUCCCUUUGUCAUCCUUCGCCUA..............................................................  607       27.3
.........................UUCCCUUUGUCAUCCUUC...................................................................  39        2.55
.........................UUCCCUUUGUCAUCCUU....................................................................  18        1.07
.........................UUCCCUUUGUCAUCCUUCGCCUAG.............................................................  11        0.576
..........................UCCCUUUGUCAUCCUUCGCCU...............................................................  158       7.1
..........................UCCCUUUGUCAUCCUUCGCC................................................................  29        1.57
..........................UCCCUUUGUCAUCCUUCGCCUA..............................................................  10        0.358
..........................UCCCUUUGUCAUCCUUCGC.................................................................  2         0.0901
..........................UCCCUUUGUCAUCCUUCG..................................................................  2         0.149
...........................CCCUUUGUCAUCCUUCGCCU...............................................................  67        3.07
...........................CCCUUUGUCAUCCUUCGCC................................................................  5         0.23
...........................CCCUUUGUCAUCCUUCGCCUA..............................................................  5         0.2
............................CCUUUGUCAUCCUUCGCCU...............................................................  18        0.784
............................CCUUUGUCAUCCUUCGCCUA..............................................................  2         0.0802
.............................CUUUGUCAUCCUUCGCCU...............................................................  6         0.279
..............................UUUGUCAUCCUUCGCCU...............................................................  5         0.22
.............................................................GGCAGGGACAGCAAAGGGGUGC...........................  8         0.2
..............................................................GCAGGGACAGCAAAGGGGUGC...........................  281       10.8
..............................................................GCAGGGACAGCAAAGGGGUG............................  125       6
..............................................................GCAGGGACAGCAAAGGGGU.............................  23        1.13
..............................................................GCAGGGACAGCAAAGGGGUGCU..........................  7         0.335
..............................................................GCAGGGACAGCAAAGGGG..............................  2         0.0996
...............................................................CAGGGACAGCAAAGGGGUGC...........................  4         0.16
UCACCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCACAGCACGGAG
((..(((.....(((((...(((((.(((((((((..(((((.((((...((.....)).)))))))))..))))))))).)))))...)))))......)))....)). (-45.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 2embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 3embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 1740melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 1946melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 2 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000106 1240melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 10615melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 457melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 2559melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 7661melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 4974melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 5765melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 1171melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 816melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000156 1squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000164 1squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000174 1squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000178 2squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 2squamous cell GEO : GSM532916 [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).