miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000115
Stem-loop ID	dme-mir-10
Mature ID	dme-miR-10-5p
Reads	dme-miR-10-5p dme-miR-10-3p Count RPM (mean number of reads per million) .......UACCCUGUAGAUCCGAAUUUGU................................................ 45 2.07 .......UACCCUGUAGAUCCGAAUUUGUU............................................... 4 0.176 .......UACCCUGUAGAUCCGAAUUUG................................................. 3 0.109 ........ACCCUGUAGAUCCGAAUUUGUU............................................... 7207 660 ........ACCCUGUAGAUCCGAAUUUGU................................................ 978 80.7 ........ACCCUGUAGAUCCGAAUUUG................................................. 239 18.2 ........ACCCUGUAGAUCCGAAUUUGUUU.............................................. 60 6.94 ........ACCCUGUAGAUCCGAAUUU.................................................. 19 3.22 ........ACCCUGUAGAUCCGAAUU................................................... 6 0.424 ........ACCCUGUAGAUCCGAAU.................................................... 2 0.155 .........CCCUGUAGAUCCGAAUUUGUU............................................... 44 5.34 .........CCCUGUAGAUCCGAAUUUGU................................................ 8 0.656 .........CCCUGUAGAUCCGAAUUUG................................................. 1 0.0194 ..........CCUGUAGAUCCGAAUUUGUU............................................... 6 0.424 ...........CUGUAGAUCCGAAUUUGUU............................................... 22 3.19 ...........CUGUAGAUCCGAAUUUGU................................................ 1 0.07 ............UGUAGAUCCGAAUUUGUU............................................... 22 3.32 .............GUAGAUCCGAAUUUGUU............................................... 3 0.342 ..............................UUAUACUAGCUUUAAGGA............................. 7 0.88 ................................AUACUAGCUUUAAGGACAA.......................... 1 0.0211 ...............................................ACAAAUUCGGUUCUAGAGAGGUUU...... 31 3.81 ...............................................ACAAAUUCGGUUCUAGAGAGGUU....... 5 0.878 ................................................CAAAUUCGGUUCUAGAGAGGUUU...... 29579 3.09e+03 ................................................CAAAUUCGGUUCUAGAGAGGUU....... 3648 322 ................................................CAAAUUCGGUUCUAGAGAGGU........ 753 64.6 ................................................CAAAUUCGGUUCUAGAGAGG......... 127 11.8 ................................................CAAAUUCGGUUCUAGAGAG.......... 92 8.15 ................................................CAAAUUCGGUUCUAGAGA........... 39 10.6 ................................................CAAAUUCGGUUCUAGAGAGGUUUG..... 32 3.04 ................................................CAAAUUCGGUUCUAGAGAGGUUUGUG... 2 0.169 ................................................CAAAUUCGGUUCUAGAGAGGUUUGU.... 2 0.169 .................................................AAAUUCGGUUCUAGAGAGGUUU...... 38 3.45 .................................................AAAUUCGGUUCUAGAGAGGUU....... 9 0.735 .................................................AAAUUCGGUUCUAGAGAGGUUUG..... 7 0.813 .................................................AAAUUCGGUUCUAGAGAGGU........ 1 0.0845 ..................................................AAUUCGGUUCUAGAGAGGUUU...... 16 1.1 ...................................................AUUCGGUUCUAGAGAGGUUU...... 4 0.342 ...................................................AUUCGGUUCUAGAGAGGUU....... 1 0.0333 ....................................................UUCGGUUCUAGAGAGGUUU...... 7 1.8 ....................................................UUCGGUUCUAGAGAGGUU....... 1 0.672 .....................................................UCGGUUCUAGAGAGGUUU...... 3 0.943 CCACGUCUACCCUGUAGAUCCGAAUUUGUUUUAUACUAGCUUUAAGGACAAAUUCGGUUCUAGAGAGGUUUGUGUGG (((((...(((((.((((.(((((((((((((............))))))))))))).)))).)).)))...))))) (-31.00)

         dme-miR-10-5p                           dme-miR-10-3p                 Count     RPM (mean number of reads per million)
.......UACCCUGUAGAUCCGAAUUUGU................................................  45        2.07
.......UACCCUGUAGAUCCGAAUUUGUU...............................................  4         0.176
.......UACCCUGUAGAUCCGAAUUUG.................................................  3         0.109
........ACCCUGUAGAUCCGAAUUUGUU...............................................  7207      660
........ACCCUGUAGAUCCGAAUUUGU................................................  978       80.7
........ACCCUGUAGAUCCGAAUUUG.................................................  239       18.2
........ACCCUGUAGAUCCGAAUUUGUUU..............................................  60        6.94
........ACCCUGUAGAUCCGAAUUU..................................................  19        3.22
........ACCCUGUAGAUCCGAAUU...................................................  6         0.424
........ACCCUGUAGAUCCGAAU....................................................  2         0.155
.........CCCUGUAGAUCCGAAUUUGUU...............................................  44        5.34
.........CCCUGUAGAUCCGAAUUUGU................................................  8         0.656
.........CCCUGUAGAUCCGAAUUUG.................................................  1         0.0194
..........CCUGUAGAUCCGAAUUUGUU...............................................  6         0.424
...........CUGUAGAUCCGAAUUUGUU...............................................  22        3.19
...........CUGUAGAUCCGAAUUUGU................................................  1         0.07
............UGUAGAUCCGAAUUUGUU...............................................  22        3.32
.............GUAGAUCCGAAUUUGUU...............................................  3         0.342
..............................UUAUACUAGCUUUAAGGA.............................  7         0.88
................................AUACUAGCUUUAAGGACAA..........................  1         0.0211
...............................................ACAAAUUCGGUUCUAGAGAGGUUU......  31        3.81
...............................................ACAAAUUCGGUUCUAGAGAGGUU.......  5         0.878
................................................CAAAUUCGGUUCUAGAGAGGUUU......  29579     3.09e+03
................................................CAAAUUCGGUUCUAGAGAGGUU.......  3648      322
................................................CAAAUUCGGUUCUAGAGAGGU........  753       64.6
................................................CAAAUUCGGUUCUAGAGAGG.........  127       11.8
................................................CAAAUUCGGUUCUAGAGAG..........  92        8.15
................................................CAAAUUCGGUUCUAGAGA...........  39        10.6
................................................CAAAUUCGGUUCUAGAGAGGUUUG.....  32        3.04
................................................CAAAUUCGGUUCUAGAGAGGUUUGUG...  2         0.169
................................................CAAAUUCGGUUCUAGAGAGGUUUGU....  2         0.169
.................................................AAAUUCGGUUCUAGAGAGGUUU......  38        3.45
.................................................AAAUUCGGUUCUAGAGAGGUU.......  9         0.735
.................................................AAAUUCGGUUCUAGAGAGGUUUG.....  7         0.813
.................................................AAAUUCGGUUCUAGAGAGGU........  1         0.0845
..................................................AAUUCGGUUCUAGAGAGGUUU......  16        1.1
...................................................AUUCGGUUCUAGAGAGGUUU......  4         0.342
...................................................AUUCGGUUCUAGAGAGGUU.......  1         0.0333
....................................................UUCGGUUCUAGAGAGGUUU......  7         1.8
....................................................UUCGGUUCUAGAGAGGUU.......  1         0.672
.....................................................UCGGUUCUAGAGAGGUUU......  3         0.943
CCACGUCUACCCUGUAGAUCCGAAUUUGUUUUAUACUAGCUUUAAGGACAAAUUCGGUUCUAGAGAGGUUUGUGUGG
(((((...(((((.((((.(((((((((((((............))))))))))))).)))).)).)))...))))) (-31.00)

miRBase

Deep sequencing reads for mature sequence MIMAT0000115

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).