miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000108
Stem-loop ID	dme-mir-3
Mature ID	dme-miR-3-3p
Reads	dme-miR-3-5p dme-miR-3-3p Count RPM (mean number of reads per million) ..UCCUGGGAUGCAUCUUGUGCAG............................................. 1 0.0506 .....UGGGAUGCAUCUUGUGCAGUUA.......................................... 10 0.684 .....UGGGAUGCAUCUUGUGCAGUU........................................... 1 0.086 ......GGGAUGCAUCUUGUGCAGUUAUG........................................ 50 4.25 ......GGGAUGCAUCUUGUGCAGUUA.......................................... 11 0.678 ......GGGAUGCAUCUUGUGCAGUUAU......................................... 4 0.26 .......GGAUGCAUCUUGUGCAGUUAUG........................................ 2833 249 .......GGAUGCAUCUUGUGCAGUUAU......................................... 181 18.8 .......GGAUGCAUCUUGUGCAGUUA.......................................... 34 2.05 ........GAUGCAUCUUGUGCAGUUAUG........................................ 4 0.157 ..........UGCAUCUUGUGCAGUUAUGUUU..................................... 44 5.67 ..........UGCAUCUUGUGCAGUUAUG........................................ 3 0.131 ..........UGCAUCUUGUGCAGUUAUGUU...................................... 1 0.201 .......................................ACAUCACUGGGCAAAGUGUGUC........ 4 0.751 ........................................CAUCACUGGGCAAAGUGUGUCU....... 6 0.289 .........................................AUCACUGGGCAAAGUGUGUCUCA..... 90 5.77 .........................................AUCACUGGGCAAAGUGUGUCUC...... 10 0.525 .........................................AUCACUGGGCAAAGUGUGUCUCAA.... 5 0.355 ..........................................UCACUGGGCAAAGUGUGUCUCA..... 61482 6.01e+03 ..........................................UCACUGGGCAAAGUGUGUCUC...... 4013 350 ..........................................UCACUGGGCAAAGUGUGUCUCAA.... 1529 143 ..........................................UCACUGGGCAAAGUGUGUCU....... 1279 111 ..........................................UCACUGGGCAAAGUGUGU......... 152 9.23 ..........................................UCACUGGGCAAAGUGUGUC........ 63 6.25 ..........................................UCACUGGGCAAAGUGUG.......... 2 1.71 ..........................................UCACUGGGCAAAGUGUGUCUCAAG... 2 0.101 ...........................................CACUGGGCAAAGUGUGUCUCA..... 239 23.5 ...........................................CACUGGGCAAAGUGUGUCUCAA.... 137 10.5 ...........................................CACUGGGCAAAGUGUGUCUC...... 16 1.11 ...........................................CACUGGGCAAAGUGUGUCU....... 4 0.206 ...........................................CACUGGGCAAAGUGUGUC........ 2 0.0785 ............................................ACUGGGCAAAGUGUGUCUCAAG... 69 5.3 ............................................ACUGGGCAAAGUGUGUCUCAA.... 68 4.8 ............................................ACUGGGCAAAGUGUGUCUCA..... 66 6.05 ............................................ACUGGGCAAAGUGUGUCUC...... 6 0.331 ............................................ACUGGGCAAAGUGUGUCU....... 1 0.0506 .............................................CUGGGCAAAGUGUGUCUCA..... 16 3.82 .............................................CUGGGCAAAGUGUGUCUCAAGA.. 9 0.472 .............................................CUGGGCAAAGUGUGUCUCAA.... 2 0.101 .............................................CUGGGCAAAGUGUGUCUC...... 1 0.0438 ..............................................UGGGCAAAGUGUGUCUCA..... 3 0.174 ...............................................GGGCAAAGUGUGUCUCA..... 1 1.47 GAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUUCAAUCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUC ((((.(((((((((..((((.((((.((((.........)))).)))).))))..))))))))).)))) (-28.70)

         dme-miR-3-5p                       dme-miR-3-3p                Count     RPM (mean number of reads per million)
..UCCUGGGAUGCAUCUUGUGCAG.............................................  1         0.0506
.....UGGGAUGCAUCUUGUGCAGUUA..........................................  10        0.684
.....UGGGAUGCAUCUUGUGCAGUU...........................................  1         0.086
......GGGAUGCAUCUUGUGCAGUUAUG........................................  50        4.25
......GGGAUGCAUCUUGUGCAGUUA..........................................  11        0.678
......GGGAUGCAUCUUGUGCAGUUAU.........................................  4         0.26
.......GGAUGCAUCUUGUGCAGUUAUG........................................  2833      249
.......GGAUGCAUCUUGUGCAGUUAU.........................................  181       18.8
.......GGAUGCAUCUUGUGCAGUUA..........................................  34        2.05
........GAUGCAUCUUGUGCAGUUAUG........................................  4         0.157
..........UGCAUCUUGUGCAGUUAUGUUU.....................................  44        5.67
..........UGCAUCUUGUGCAGUUAUG........................................  3         0.131
..........UGCAUCUUGUGCAGUUAUGUU......................................  1         0.201
.......................................ACAUCACUGGGCAAAGUGUGUC........  4         0.751
........................................CAUCACUGGGCAAAGUGUGUCU.......  6         0.289
.........................................AUCACUGGGCAAAGUGUGUCUCA.....  90        5.77
.........................................AUCACUGGGCAAAGUGUGUCUC......  10        0.525
.........................................AUCACUGGGCAAAGUGUGUCUCAA....  5         0.355
..........................................UCACUGGGCAAAGUGUGUCUCA.....  61482     6.01e+03
..........................................UCACUGGGCAAAGUGUGUCUC......  4013      350
..........................................UCACUGGGCAAAGUGUGUCUCAA....  1529      143
..........................................UCACUGGGCAAAGUGUGUCU.......  1279      111
..........................................UCACUGGGCAAAGUGUGU.........  152       9.23
..........................................UCACUGGGCAAAGUGUGUC........  63        6.25
..........................................UCACUGGGCAAAGUGUG..........  2         1.71
..........................................UCACUGGGCAAAGUGUGUCUCAAG...  2         0.101
...........................................CACUGGGCAAAGUGUGUCUCA.....  239       23.5
...........................................CACUGGGCAAAGUGUGUCUCAA....  137       10.5
...........................................CACUGGGCAAAGUGUGUCUC......  16        1.11
...........................................CACUGGGCAAAGUGUGUCU.......  4         0.206
...........................................CACUGGGCAAAGUGUGUC........  2         0.0785
............................................ACUGGGCAAAGUGUGUCUCAAG...  69        5.3
............................................ACUGGGCAAAGUGUGUCUCAA....  68        4.8
............................................ACUGGGCAAAGUGUGUCUCA.....  66        6.05
............................................ACUGGGCAAAGUGUGUCUC......  6         0.331
............................................ACUGGGCAAAGUGUGUCU.......  1         0.0506
.............................................CUGGGCAAAGUGUGUCUCA.....  16        3.82
.............................................CUGGGCAAAGUGUGUCUCAAGA..  9         0.472
.............................................CUGGGCAAAGUGUGUCUCAA....  2         0.101
.............................................CUGGGCAAAGUGUGUCUC......  1         0.0438
..............................................UGGGCAAAGUGUGUCUCA.....  3         0.174
...............................................GGGCAAAGUGUGUCUCA.....  1         1.47
GAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUUCAAUCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUC
((((.(((((((((..((((.((((.((((.........)))).)))).))))..))))))))).)))) (-28.70)

miRBase

Deep sequencing reads for mature sequence MIMAT0000108

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).