Deep sequencing reads for mature sequence MIMAT0000061

Stem-loop ID

cel-mir-90

Mature ID

cel-miR-90-3p

Reads

                cel-miR-90-5p                                 cel-miR-90-3p                         Count     RPM (mean number of reads per million)
...............CGGCUUUCAACGACGAUAUCAAC............................................................  44        25.9
...............CGGCUUUCAACGACGAUAUCAA.............................................................  3         1.99
...............CGGCUUUCAACGACGAUAUCA..............................................................  1         0.463
................GGCUUUCAACGACGAUAUCAAC............................................................  3         1.39
................GGCUUUCAACGACGAUAUCAA.............................................................  1         0.463
......................................CGACAACUCACACUUUUGCGUGU.....................................  4         3.05
......................................CGACAACUCACACUUUUGCGU.......................................  1         0.463
............................................................UUGAUAUGUUGUUUGAAUGCCCCU..............  1         0.463
.............................................................UGAUAUGUUGUUUGAAUGCCCCU..............  1761      1.75e+03
.............................................................UGAUAUGUUGUUUGAAUGCCCC...............  816       900
.............................................................UGAUAUGUUGUUUGAAUGCCC................  781       717
.............................................................UGAUAUGUUGUUUGAAUGCC.................  413       500
.............................................................UGAUAUGUUGUUUGAAUGC..................  121       189
.............................................................UGAUAUGUUGUUUGAAUG...................  77        112
.............................................................UGAUAUGUUGUUUGAAUGCCCCUU.............  20        27.1
..............................................................GAUAUGUUGUUUGAAUGCCCC...............  8         11.2
..............................................................GAUAUGUUGUUUGAAUGCCCCU..............  6         7.36
..............................................................GAUAUGUUGUUUGAAUGCCCCUU.............  1         3.1
..............................................................GAUAUGUUGUUUGAAUGCCC................  1         1.25
...............................................................AUAUGUUGUUUGAAUGCCCCU..............  4         5.6
...............................................................AUAUGUUGUUUGAAUGCC.................  1         1.06
...............................................................AUAUGUUGUUUGAAUGCCC................  1         1.06
...............................................................AUAUGUUGUUUGAAUGCCCCUU.............  1         1.25
................................................................UAUGUUGUUUGAAUGCCCCU..............  5         6.66
................................................................UAUGUUGUUUGAAUGCCCC...............  5         6.66
................................................................UAUGUUGUUUGAAUGCCC................  3         3.7
.................................................................AUGUUGUUUGAAUGCCCCU..............  9         13.3
.................................................................AUGUUGUUUGAAUGCCC................  3         4.02
.................................................................AUGUUGUUUGAAUGCCCC...............  2         2.64
.................................................................AUGUUGUUUGAAUGCCCCUU.............  1         1.58
..................................................................UGUUGUUUGAAUGCCCCU..............  1         1.58
..................................................................UGUUGUUUGAAUGCCCC...............  1         1.58
...................................................................GUUGUUUGAAUGCCCCU..............  4         6.11
...................................................................GUUGUUUGAAUGCCCCUU.............  2         3.8
GGGCGCCAUUUCGAGCGGCUUUCAACGACGAUAUCAACCGACAACUCACACUUUUGCGUGUUGAUAUGUUGUUUGAAUGCCCCUUGAAUUGGAUGCCA
.(((((((.((((((.(((.(((((((((.((((((((((.(((.........))))).)))))))))))).))))).))).)))))).))).)))). (-43.20)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000024	1045	whole body	GEO : GSM378784		[ de Wit E et al.]
ER0000000203	165	adult	GEO : GSM604032	strain: N2 wild-type, age: Day 0	[ de Lencastre A et al.]
ER0000000204	539	adult	GEO : GSM604033	strain: N2 wild-type, age: Day 10	[ de Lencastre A et al.]
ER0000000205	463	adult	GEO : GSM604034	strain: daf-2(e1379) mutant, age: Day 0	[ de Lencastre A et al.]
ER0000000206	582	adult	GEO : GSM604035	strain: daf-2(e1379) mutant, age: Day 10	[ de Lencastre A et al.]
ER0000000212	2551	whole body	GEO : GSM139137	mixed-stage	[ Ruby JG et al.]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).