Deep sequencing reads for stem-loop sequence MI0019224

Stem-loop ID ath-MIR5648
Reads 
                                                                                                                                                      ath-miR5648-5p                                                                                                                                                                                                      ath-miR5648-3p                                                                                                                              Count     RPM (mean number of reads per million)
..............................................................AAGAUGGUAUGAUCUGUAGGGUCU..............................................................................................................................................................................................................................................................................................................................................................................................................................  4         62.8
................................................................GAUGGUAUGAUCUGUAGGGUCUCU............................................................................................................................................................................................................................................................................................................................................................................................................................  1         15.7
..........................................................................UCUGUAGGGUCUCUUGGCAUU.....................................................................................................................................................................................................................................................................................................................................................................................................................  1         0.241
.....................................................................................................................................AGAUUGUCUUUUUAAUGUUUGGAA.......................................................................................................................................................................................................................................................................................................................................................  6         49.8
.............................................................................................................................................................AUAUUUGGCUUGACUCUGUAUGA................................................................................................................................................................................................................................................................................................................................  2         16.6
CUUCAUCAUCACUAGACUCAUGUUUUCUAACCUUUCUCAUUCCGUUAUGAAUCAUAGGUUGAAAGAUGGUAUGAUCUGUAGGGUCUCUUGGCAUUAAAACAUUGAUUAAAAGGUGUUUGCCUCUAUUUGCUUCAGAUUGUCUUUUUAAUGUUUGGAAAUAUUUGGCUUGACUCUGUAUGAAAAAAAAGUCAAGUUUCAAUCAAGUGAAUAUAUUGGAAAUUUAUAGCUUCCAAGUUUCUUUUUAAAGAUGGUUUUAAUCGAUAUAUAUUUGGAAGCUAUAUAUUCCUCUAAUUCACUUAAUUGAAACUUAAUUUUUUUUUCCAAAACAAAGUCAAGCCAAAUAUUCCAAACAUUGAAGCAACAAUCUGAAGAAAAUAGCGGCAUACGCCCUUUAGUUAGCCAAUGUUAAAAUGUCAAGAGACCAUGCAGAUUAGAUCCAACUUUCAAGCUAUUUUUUUUUAAGGAAUGUAAAAGGUUAAAAGACAUGAGUCUAGUGAUGA
.....(((((((((((((((((((((.((((((((..((((((.....(((..((((.(((((((.(((..(((((((((.((((((((((((((..(((((((((((((.(((((.((((.((((((.(((((((((((..(((((((((((((((.((((((((((((((.(((..(((((((((((.((((((((((.((((((((.((..((((...((((((((((((((.((...((((((....))))))..)).....))))))))))))))..))))..)))))))))).)))))))))).)))))))))))....))).)))))))))))))))))))))))))))))..))))))))))).)))))).)))).))))).))))))....)))))))..)))))))))))))).)))))))))...))).))))))).))))..))).....))))))..)))))))).))))))))))))))))))))) (-249.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000003 1whole body GEO : GSM253622 [ Mi S et al.]
ER0000000005 5whole body GEO : GSM253624 [ Mi S et al.]
ER0000000211 8silique GEO : GSM118375 [ Rajagopalan R et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).