miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0019060
Stem-loop ID	osa-MIR5539
Reads	osa-miR5539 Count RPM (mean number of reads per million) ........GCAAGAAAACGGAUGCGCG................................................. 19 9.13 .............AAAACGGAUGCGCGUGCUAACGCUU...................................... 25 12 ................ACGGAUGCGCGUGCUAACGCU....................................... 21 9.89 ....................AUGCGCGUGCUAACGCUUUCGCGC................................ 24 11.5 GAUUCAAAGCAAGAAAACGGAUGCGCGUGCUAACGCUUUCGCGCUAGUGCGCUCAAUCCGUUGCUUGUUUGGAACA ..(((.(((((((..((((((((.(((..(((.(((....))).)))..))).).))))))).))))))).))).. (-34.30)

             osa-miR5539                                                      Count     RPM (mean number of reads per million)
........GCAAGAAAACGGAUGCGCG.................................................  19        9.13
.............AAAACGGAUGCGCGUGCUAACGCUU......................................  25        12
................ACGGAUGCGCGUGCUAACGCU.......................................  21        9.89
....................AUGCGCGUGCUAACGCUUUCGCGC................................  24        11.5
GAUUCAAAGCAAGAAAACGGAUGCGCGUGCUAACGCUUUCGCGCUAGUGCGCUCAAUCCGUUGCUUGUUUGGAACA
..(((.(((((((..((((((((.(((..(((.(((....))).)))..))).).))))))).))))))).))).. (-34.30)

Accession

Read count

Tissue

Link

Comment

Reference

ER0000000201

whole body

GEO : GSM571077

strain: indica 93-11, age: 12-day-old, stress: control

[ Li T et al.]

ER0000000202

whole body

GEO : GSM571078

strain: indica 93-11, stress: H2O2

[ Li T et al.]

miRBase

Deep sequencing reads for stem-loop sequence MI0019060

Filter reads

References

References
1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).