miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0018016
Stem-loop ID	mmu-mir-5107
Reads	mmu-miR-5107-5p mmu-miR-5107-3p Count RPM (mean number of reads per million) .CCAAGAUGUUGGGCAGAGGA................................................................... 1 0.00673 .CCAAGAUGUUGGGCAGAGGAGG................................................................. 1 0.0114 ....AGAUGUUGGGCAGAGGAGGC................................................................ 1 0.0116 ........GUUGGGCAGAGGAGGCAGGGACAA........................................................ 1 0.0105 ........GUUGGGCAGAGGAGGCAGG............................................................. 1 0.00575 ........GUUGGGCAGAGGAGGCAGGGA........................................................... 1 0.0111 .........UUGGGCAGAGGAGGCAGGGACA......................................................... 1683 13.3 .........UUGGGCAGAGGAGGCAGGGAC.......................................................... 1113 8.69 .........UUGGGCAGAGGAGGCAGGGACAA........................................................ 998 7.61 .........UUGGGCAGAGGAGGCAGGGA........................................................... 750 6.07 .........UUGGGCAGAGGAGGCAGGG............................................................ 179 1.43 .........UUGGGCAGAGGAGGCAGGGACAAC....................................................... 12 0.102 .........UUGGGCAGAGGAGGCAGGGACAACA...................................................... 7 0.0527 .........UUGGGCAGAGGAGGCAGGGACAACAA..................................................... 5 0.0446 .........UUGGGCAGAGGAGGCAGGGACAACAAAC................................................... 1 0.0103 ..........UGGGCAGAGGAGGCAGGGACA......................................................... 496 3.9 ..........UGGGCAGAGGAGGCAGGGACAA........................................................ 342 2.53 ..........UGGGCAGAGGAGGCAGGGAC.......................................................... 239 1.85 ..........UGGGCAGAGGAGGCAGGGA........................................................... 145 1.05 ..........UGGGCAGAGGAGGCAGGGACAAC....................................................... 4 0.0304 ..........UGGGCAGAGGAGGCAGGGACAACA...................................................... 2 0.0153 ..........UGGGCAGAGGAGGCAGGGACAACAA..................................................... 1 0.0105 ...........GGGCAGAGGAGGCAGGGACA......................................................... 3 0.0226 ...........GGGCAGAGGAGGCAGGGACAA........................................................ 1 0.0105 ...........GGGCAGAGGAGGCAGGGAC.......................................................... 1 0.00575 ............GGCAGAGGAGGCAGGGACA......................................................... 1 0.0069 ..............CAGAGGAGGCAGGGACAACA...................................................... 4 0.0288 ..............CAGAGGAGGCAGGGACAACAA..................................................... 1 0.0114 ..............CAGAGGAGGCAGGGACAACAAACUG................................................. 1 0.0127 ........................AGGGACAACAAACUGGUGGC............................................ 1 0.0103 .........................GGGACAACAAACUGGUGGC............................................ 1 0.0103 ...............................ACAAACUGGUGGCCCAGCU...................................... 1 0.00673 ................................................CUGUAUCAACCUGUGCUUCUCUUCCCAGUC.......... 1 0.00575 ......................................................CAACCUGUGCUUCUCUUCCCAGU........... 22 0.172 ......................................................CAACCUGUGCUUCUCUUCCCAG............ 3 0.0244 ......................................................CAACCUGUGCUUCUCUUCCCA............. 1 0.00575 .......................................................AACCUGUGCUUCUCUUCCCAGU........... 6 0.042 UCCAAGAUGUUGGGCAGAGGAGGCAGGGACAACAAACUGGUGGCCCAGCUGUAUCAACCUGUGCUUCUCUUCCCAGUCACCCUGUGAA ((((.(.(((((((.((((((((((((....(((..((((....)))).))).....))))).))))))).))))).)).).)).)). (-31.90)

        mmu-miR-5107-5p                             mmu-miR-5107-3p                       Count     RPM (mean number of reads per million)
.CCAAGAUGUUGGGCAGAGGA...................................................................  1         0.00673
.CCAAGAUGUUGGGCAGAGGAGG.................................................................  1         0.0114
....AGAUGUUGGGCAGAGGAGGC................................................................  1         0.0116
........GUUGGGCAGAGGAGGCAGGGACAA........................................................  1         0.0105
........GUUGGGCAGAGGAGGCAGG.............................................................  1         0.00575
........GUUGGGCAGAGGAGGCAGGGA...........................................................  1         0.0111
.........UUGGGCAGAGGAGGCAGGGACA.........................................................  1683      13.3
.........UUGGGCAGAGGAGGCAGGGAC..........................................................  1113      8.69
.........UUGGGCAGAGGAGGCAGGGACAA........................................................  998       7.61
.........UUGGGCAGAGGAGGCAGGGA...........................................................  750       6.07
.........UUGGGCAGAGGAGGCAGGG............................................................  179       1.43
.........UUGGGCAGAGGAGGCAGGGACAAC.......................................................  12        0.102
.........UUGGGCAGAGGAGGCAGGGACAACA......................................................  7         0.0527
.........UUGGGCAGAGGAGGCAGGGACAACAA.....................................................  5         0.0446
.........UUGGGCAGAGGAGGCAGGGACAACAAAC...................................................  1         0.0103
..........UGGGCAGAGGAGGCAGGGACA.........................................................  496       3.9
..........UGGGCAGAGGAGGCAGGGACAA........................................................  342       2.53
..........UGGGCAGAGGAGGCAGGGAC..........................................................  239       1.85
..........UGGGCAGAGGAGGCAGGGA...........................................................  145       1.05
..........UGGGCAGAGGAGGCAGGGACAAC.......................................................  4         0.0304
..........UGGGCAGAGGAGGCAGGGACAACA......................................................  2         0.0153
..........UGGGCAGAGGAGGCAGGGACAACAA.....................................................  1         0.0105
...........GGGCAGAGGAGGCAGGGACA.........................................................  3         0.0226
...........GGGCAGAGGAGGCAGGGACAA........................................................  1         0.0105
...........GGGCAGAGGAGGCAGGGAC..........................................................  1         0.00575
............GGCAGAGGAGGCAGGGACA.........................................................  1         0.0069
..............CAGAGGAGGCAGGGACAACA......................................................  4         0.0288
..............CAGAGGAGGCAGGGACAACAA.....................................................  1         0.0114
..............CAGAGGAGGCAGGGACAACAAACUG.................................................  1         0.0127
........................AGGGACAACAAACUGGUGGC............................................  1         0.0103
.........................GGGACAACAAACUGGUGGC............................................  1         0.0103
...............................ACAAACUGGUGGCCCAGCU......................................  1         0.00673
................................................CUGUAUCAACCUGUGCUUCUCUUCCCAGUC..........  1         0.00575
......................................................CAACCUGUGCUUCUCUUCCCAGU...........  22        0.172
......................................................CAACCUGUGCUUCUCUUCCCAG............  3         0.0244
......................................................CAACCUGUGCUUCUCUUCCCA.............  1         0.00575
.......................................................AACCUGUGCUUCUCUUCCCAGU...........  6         0.042
UCCAAGAUGUUGGGCAGAGGAGGCAGGGACAACAAACUGGUGGCCCAGCUGUAUCAACCUGUGCUUCUCUUCCCAGUCACCCUGUGAA
((((.(.(((((((.((((((((((((....(((..((((....)))).))).....))))).))))))).))))).)).).)).)). (-31.90)

miRBase

Deep sequencing reads for stem-loop sequence MI0018016

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).