Deep sequencing reads for stem-loop sequence MI0017897

Stem-loop ID

ath-MIR5027

Reads

                       ath-miR5027                                                                                                                                Count     RPM (mean number of reads per million)
....................AACCGGUUGGAACUUGCCUUA........................................................................................................................  1         30.4
.....................ACCGGUUGGAACUUGCCUUAA.......................................................................................................................  1         30.4
................................CUUGCCUUAACCAAGAAAAGCUA..........................................................................................................  1         47.1
UCAAUUUAGAUAUGUGAGAAAACCGGUUGGAACUUGCCUUAACCAAGAAAAGCUACAAAAUAUUUUUUUUCUGACAAAAAAAAGAAAAAGAAAAUCGAUUUUGUGGUUUUCUUGGUUAAGCCAGGUUCAAACCGAUUUACAUGCAUGUGUUGGAUGUGUGA
(((((.((..((((((((.....(((((.(((((((.((((((((((((((.(((((((((.((((((((((..........)))))))))).....))))))))))))))))))))))).))))))).))))).))))))))..)).)))))........ (-58.40)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000004	2	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000006	1	whole body	GEO : GSM253625		[ Mi S et al.]

References

1. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).