miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0017247
Stem-loop ID	osa-MIR812m
Reads	osa-miR812m Count RPM (mean number of reads per million) ....AUAAGUUUCCGCGCCCAACUUUGA................................................................................................................................................................ 24 5.77 .......AGUUUCCGCGCCCAACUUUGAUCG............................................................................................................................................................. 24 5.77 ........GUUUCCGCGCCCAACUUUGA................................................................................................................................................................ 20 4.71 .............CGCGCCCAACUUUGAUCGUCCGU........................................................................................................................................................ 23 5.42 ...............CGCCCAACUUUGAUCGUCCGU........................................................................................................................................................ 42 9.99 ................GCCCAACUUUGAUCGUCCG......................................................................................................................................................... 19 4.48 .................CCCAACUUUGAUCGUCCGU........................................................................................................................................................ 38 9.04 ..................CCAACUUUGAUCGUCCGU........................................................................................................................................................ 18 4.24 ...................CAACUUUGAUCGUCCGUC....................................................................................................................................................... 18 4.24 .............................................................................................GAAUAGUACUUUACUCGUGACUUA....................................................................... 24 5.65 ..............................................................................................AAUAGUACUUUACUCGUGACUUAU...................................................................... 24 5.77 ...................................................................................................UACUUUACUCGUGACUUAUGUUU.................................................................. 23 5.42 ...................................................................................................UACUUUACUCGUGACUUAUGUU................................................................... 1 11.8 .......................................................................................................................................AAAAAAUUAUAAAUAAGACGAACG............................. 24 5.65 ................................................................................................................................................UAAAUAAGACGAACGGUUAA........................ 20 4.81 .................................................................................................................................................AAAUAAGACGAACGGUUAAAGUUG................... 24 5.77 .................................................................................................................................................AAAUAAGACGAACGGUUAA........................ 19 4.48 ..................................................................................................................................................AAUAAGACGAACGGUUAAAGUUGG.................. 48 11.4 ..................................................................................................................................................AAUAAGACGAACGGUUAAAGUUG................... 23 5.42 ..................................................................................................................................................AAUAAGACGAACGGUUAAAGUU.................... 22 5.18 ...................................................................................................................................................AUAAGACGAACGGUUAAAGUUGGA................. 48 11.4 ....................................................................................................................................................UAAGACGAACGGUUAAAGUUGGAC................ 24 5.65 .....................................................................................................................................................AAGACGAACGGUUAAAGUUGGACG............... 48 11.4 .....................................................................................................................................................AAGACGAACGGUUAAAGUUG................... 40 9.52 .....................................................................................................................................................AAGACGAACGGUUAAAGUUGGA................. 22 5.18 .....................................................................................................................................................AAGACGAACGGUUAAAGUUGG.................. 21 4.95 .....................................................................................................................................................AAGACGAACGGUUAAAGUU.................... 19 4.48 .....................................................................................................................................................AAGACGAACGGUUAAAGU..................... 18 4.32 ......................................................................................................................................................AGACGAACGGUUAAAGUUGGACGC.............. 48 11.4 ......................................................................................................................................................AGACGAACGGUUAAAGUUGGACG............... 23 5.53 .......................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGG............ 50 11.9 .......................................................................................................................................................GACGAACGGUUAAAGUUGGACGCG............. 48 11.4 .......................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGGA........... 26 6.13 .......................................................................................................................................................GACGAACGGUUAAAGUUGGACGC.............. 23 5.42 ........................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGGA........... 50 11.9 ........................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGG............ 48 11.4 ........................................................................................................................................................ACGAACGGUUAAAGUUGGACGCG............. 46 10.9 ........................................................................................................................................................ACGAACGGUUAAAGUUGGACGC.............. 44 10.5 ........................................................................................................................................................ACGAACGGUUAAAGUUGGAC................ 20 4.81 .........................................................................................................................................................CGAACGGUUAAAGUUGGACGCGGA........... 48 11.4 .........................................................................................................................................................CGAACGGUUAAAGUUGGACGCGG............ 46 10.9 ..........................................................................................................................................................GAACGGUUAAAGUUGGACGCGGAA.......... 48 11.4 ..........................................................................................................................................................GAACGGUUAAAGUUGGACGCGG............ 44 10.5 ..........................................................................................................................................................GAACGGUUAAAGUUGGACG............... 19 4.57 ...........................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAA......... 48 11.4 ...........................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAAA........ 25 6.01 ...........................................................................................................................................................AACGGUUAAAGUUGGACGCGGAA.......... 23 5.53 ...........................................................................................................................................................AACGGUUAAAGUUGGACGCGG............ 21 5.05 ............................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAA........ 48 11.4 ............................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAAC....... 25 6.01 ............................................................................................................................................................ACGGUUAAAGUUGGACGCGG............ 20 4.71 .............................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAAC....... 48 11.4 .............................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAA........ 23 5.42 .............................................................................................................................................................CGGUUAAAGUUGGACGCGGAA.......... 21 5.05 .............................................................................................................................................................CGGUUAAAGUUGGACGCGGA........... 20 4.71 AGUCAUAAGUUUCCGCGCCCAACUUUGAUCGUCCGUCUUAUUUGAAAUUUUUUUAUAAUUAGUAUUUUUUGUUGUUAUGAGAUAAUAAAAUAUGAAUAGUACUUUACUCGUGACUUAUGUUUUUAAUUUUUUUUAAAAAAAUUAUAAAUAAGACGAACGGUUAAAGUUGGACGCGGAAAACUAUAGCU ((..(((..((((((((.((((((((((((((.(((((((((((.((((((((((.((((((...........((((((((....((((.(((.....))).))))))))))))........)))))).....)))))))))).))))))))))).)))))))))))))).))))))))..)))..)) (-66.01)

                                                                                                                                                            osa-miR812m                       Count     RPM (mean number of reads per million)
....AUAAGUUUCCGCGCCCAACUUUGA................................................................................................................................................................  24        5.77
.......AGUUUCCGCGCCCAACUUUGAUCG.............................................................................................................................................................  24        5.77
........GUUUCCGCGCCCAACUUUGA................................................................................................................................................................  20        4.71
.............CGCGCCCAACUUUGAUCGUCCGU........................................................................................................................................................  23        5.42
...............CGCCCAACUUUGAUCGUCCGU........................................................................................................................................................  42        9.99
................GCCCAACUUUGAUCGUCCG.........................................................................................................................................................  19        4.48
.................CCCAACUUUGAUCGUCCGU........................................................................................................................................................  38        9.04
..................CCAACUUUGAUCGUCCGU........................................................................................................................................................  18        4.24
...................CAACUUUGAUCGUCCGUC.......................................................................................................................................................  18        4.24
.............................................................................................GAAUAGUACUUUACUCGUGACUUA.......................................................................  24        5.65
..............................................................................................AAUAGUACUUUACUCGUGACUUAU......................................................................  24        5.77
...................................................................................................UACUUUACUCGUGACUUAUGUUU..................................................................  23        5.42
...................................................................................................UACUUUACUCGUGACUUAUGUU...................................................................  1         11.8
.......................................................................................................................................AAAAAAUUAUAAAUAAGACGAACG.............................  24        5.65
................................................................................................................................................UAAAUAAGACGAACGGUUAA........................  20        4.81
.................................................................................................................................................AAAUAAGACGAACGGUUAAAGUUG...................  24        5.77
.................................................................................................................................................AAAUAAGACGAACGGUUAA........................  19        4.48
..................................................................................................................................................AAUAAGACGAACGGUUAAAGUUGG..................  48        11.4
..................................................................................................................................................AAUAAGACGAACGGUUAAAGUUG...................  23        5.42
..................................................................................................................................................AAUAAGACGAACGGUUAAAGUU....................  22        5.18
...................................................................................................................................................AUAAGACGAACGGUUAAAGUUGGA.................  48        11.4
....................................................................................................................................................UAAGACGAACGGUUAAAGUUGGAC................  24        5.65
.....................................................................................................................................................AAGACGAACGGUUAAAGUUGGACG...............  48        11.4
.....................................................................................................................................................AAGACGAACGGUUAAAGUUG...................  40        9.52
.....................................................................................................................................................AAGACGAACGGUUAAAGUUGGA.................  22        5.18
.....................................................................................................................................................AAGACGAACGGUUAAAGUUGG..................  21        4.95
.....................................................................................................................................................AAGACGAACGGUUAAAGUU....................  19        4.48
.....................................................................................................................................................AAGACGAACGGUUAAAGU.....................  18        4.32
......................................................................................................................................................AGACGAACGGUUAAAGUUGGACGC..............  48        11.4
......................................................................................................................................................AGACGAACGGUUAAAGUUGGACG...............  23        5.53
.......................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGG............  50        11.9
.......................................................................................................................................................GACGAACGGUUAAAGUUGGACGCG.............  48        11.4
.......................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGGA...........  26        6.13
.......................................................................................................................................................GACGAACGGUUAAAGUUGGACGC..............  23        5.42
........................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGGA...........  50        11.9
........................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGG............  48        11.4
........................................................................................................................................................ACGAACGGUUAAAGUUGGACGCG.............  46        10.9
........................................................................................................................................................ACGAACGGUUAAAGUUGGACGC..............  44        10.5
........................................................................................................................................................ACGAACGGUUAAAGUUGGAC................  20        4.81
.........................................................................................................................................................CGAACGGUUAAAGUUGGACGCGGA...........  48        11.4
.........................................................................................................................................................CGAACGGUUAAAGUUGGACGCGG............  46        10.9
..........................................................................................................................................................GAACGGUUAAAGUUGGACGCGGAA..........  48        11.4
..........................................................................................................................................................GAACGGUUAAAGUUGGACGCGG............  44        10.5
..........................................................................................................................................................GAACGGUUAAAGUUGGACG...............  19        4.57
...........................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAA.........  48        11.4
...........................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAAA........  25        6.01
...........................................................................................................................................................AACGGUUAAAGUUGGACGCGGAA..........  23        5.53
...........................................................................................................................................................AACGGUUAAAGUUGGACGCGG............  21        5.05
............................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAA........  48        11.4
............................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAAC.......  25        6.01
............................................................................................................................................................ACGGUUAAAGUUGGACGCGG............  20        4.71
.............................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAAC.......  48        11.4
.............................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAA........  23        5.42
.............................................................................................................................................................CGGUUAAAGUUGGACGCGGAA..........  21        5.05
.............................................................................................................................................................CGGUUAAAGUUGGACGCGGA...........  20        4.71
AGUCAUAAGUUUCCGCGCCCAACUUUGAUCGUCCGUCUUAUUUGAAAUUUUUUUAUAAUUAGUAUUUUUUGUUGUUAUGAGAUAAUAAAAUAUGAAUAGUACUUUACUCGUGACUUAUGUUUUUAAUUUUUUUUAAAAAAAUUAUAAAUAAGACGAACGGUUAAAGUUGGACGCGGAAAACUAUAGCU
((..(((..((((((((.((((((((((((((.(((((((((((.((((((((((.((((((...........((((((((....((((.(((.....))).))))))))))))........)))))).....)))))))))).))))))))))).)))))))))))))).))))))))..)))..)) (-66.01)

miRBase

Deep sequencing reads for stem-loop sequence MI0017247

Filter reads

References

References
1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).