miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0016969
Stem-loop ID	mmu-mir-3096b
Reads	mmu-miR-3096b-5p mmu-miR-3096b-3p Count RPM (mean number of reads per million) .........UGGCCAAGGAUGAGAAC................................................................. 246 1.49 .........UGGCCAAGGAUGAGAACUCUAACCUGACU..................................................... 162 0.739 .........UGGCCAAGGAUGAGAACUC............................................................... 60 0.33 .........UGGCCAAGGAUGAGAACUCUAACCUGAC...................................................... 48 0.216 .........UGGCCAAGGAUGAGAACUCUAACCUGA....................................................... 23 0.113 .........UGGCCAAGGAUGAGAACUCUAACCUGACUG.................................................... 22 0.1 .........UGGCCAAGGAUGAGAACU................................................................ 19 0.224 .........UGGCCAAGGAUGAGAACUCU.............................................................. 19 0.141 .........UGGCCAAGGAUGAGAACUCUAA............................................................ 15 0.0652 .........UGGCCAAGGAUGAGAACUCUAAC........................................................... 8 0.0383 .........UGGCCAAGGAUGAGAACUCUA............................................................. 8 0.0802 .........UGGCCAAGGAUGAGAACUCUAACCU......................................................... 2 0.00801 .........UGGCCAAGGAUGAGAACUCUAACC.......................................................... 1 0.0145 ..........GGCCAAGGAUGAGAACUCUAACCUGACU..................................................... 535 2.4 ..........GGCCAAGGAUGAGAACUCUAACCUGAC...................................................... 248 0.995 ..........GGCCAAGGAUGAGAACUCUAACCUGA....................................................... 132 0.572 ..........GGCCAAGGAUGAGAACUCUAACCUGACUG.................................................... 52 0.234 ..........GGCCAAGGAUGAGAACUCU.............................................................. 33 0.159 ..........GGCCAAGGAUGAGAACUCUAACCUGACUGG................................................... 26 0.119 ..........GGCCAAGGAUGAGAACUCUAACC.......................................................... 20 0.0873 ..........GGCCAAGGAUGAGAACU................................................................ 13 0.243 ..........GGCCAAGGAUGAGAACUCUAACCUG........................................................ 5 0.0244 ...........GCCAAGGAUGAGAACUCUAACCUGACU..................................................... 118 0.509 ...........GCCAAGGAUGAGAACUCUAACCUGAC...................................................... 44 0.208 ...........GCCAAGGAUGAGAACUCUAACCUGA....................................................... 20 0.0829 ...........GCCAAGGAUGAGAACUCUAACCUGACUG.................................................... 17 0.0819 ...........GCCAAGGAUGAGAACUCUAACCUGACUGG................................................... 8 0.0359 ...........GCCAAGGAUGAGAACUCUAACCUGACUGGA.................................................. 7 0.0328 ...........GCCAAGGAUGAGAACUCUAAC........................................................... 6 0.0241 ...........GCCAAGGAUGAGAACUCU.............................................................. 1 0.00293 ............CCAAGGAUGAGAACUCUAACCUGACU..................................................... 8 0.0401 ............CCAAGGAUGAGAACUCUAACCUGACUGGAU................................................. 2 0.00918 ............CCAAGGAUGAGAACUCUAACCUGACUGG................................................... 1 0.0039 ............CCAAGGAUGAGAACUCUAACCUGAC...................................................... 1 0.00571 ............CCAAGGAUGAGAACUCU.............................................................. 1 0.0118 ..............AAGGAUGAGAACUCUAACCUGACU..................................................... 2 0.011 ...............AGGAUGAGAACUCUAACCUGACUGGAUA................................................ 1 0.00436 ...............AGGAUGAGAACUCUAACCUGACUGGAUACG.............................................. 1 0.00354 .................GAUGAGAACUCUAACCUGACUGGAU................................................. 1 0.00284 ..................AUGAGAACUCUAACCUGACUGGAU................................................. 2 0.0119 ..................AUGAGAACUCUAACCUGACUGGAUA................................................ 2 0.00761 ..................AUGAGAACUCUAACCUGACUGGA.................................................. 1 0.00844 ..................AUGAGAACUCUAACCUGACU..................................................... 1 0.00247 ..................AUGAGAACUCUAACCUGACUGGAUAC............................................... 1 0.00247 ...................UGAGAACUCUAACCUGACUGGAUACGC............................................. 1 0.00247 ............................UAACCUGACUGGAUACGCUGCUGUGAUGG.................................. 2 0.00478 ............................UAACCUGACUGGAUACGCUGCUGUGAUG................................... 2 0.00542 ............................UAACCUGACUGGAUACGCUGCUGUGAUGGG................................. 2 0.00709 ............................UAACCUGACUGGAUACGCUGCUGUGAU.................................... 1 0.00354 .............................AACCUGACUGGAUACGCUGCUGUGAUGGGU................................ 6 0.0201 .............................AACCUGACUGGAUACGCUGCUG........................................ 1 0.00239 .............................AACCUGACUGGAUACGCUGCU......................................... 1 0.00354 ..............................ACCUGACUGGAUACGCUGCUGUGAUGGG................................. 1 0.0053 ................................CUGACUGGAUACGCUGCUGUGA..................................... 1 0.00571 .................................UGACUGGAUACGCUGCUGUGAUGGG................................. 1 0.00513 ...................................ACUGGAUACGCUGCUGUGAUGGGU................................ 2 0.0143 .......................................GAUACGCUGCUGUGAUGGGUU............................... 1 0.00513 .......................................GAUACGCUGCUGUGAUGGGUUAAAGG.......................... 1 0.00513 ........................................AUACGCUGCUGUGAUGGGUUAA............................. 1 0.00388 ........................................AUACGCUGCUGUGAUGGGUUA.............................. 1 0.00436 ..........................................ACGCUGCUGUGAUGGGUUAA............................. 1 0.00366 ...........................................CGCUGCUGUGAUGGGUUAA............................. 2 0.0102 ............................................GCUGCUGUGAUGGGUUAAAGGAUUUA..................... 3 0.0102 ............................................GCUGCUGUGAUGGGUUAAAGGAU........................ 1 0.00366 .............................................CUGCUGUGAUGGGUUAAAGGAUUUA..................... 11 0.0318 .............................................CUGCUGUGAUGGGUUAAAGGAUUU...................... 6 0.0205 .............................................CUGCUGUGAUGGGUUAAAGG.......................... 2 0.0162 .............................................CUGCUGUGAUGGGUUAA............................. 2 0.0237 .............................................CUGCUGUGAUGGGUUAAAGGAUU....................... 1 0.014 ..............................................UGCUGUGAUGGGUUAAAGGAUUUA..................... 2 0.00643 ................................................CUGUGAUGGGUUAAAGGAUUUACC................... 1 0.00247 ................................................CUGUGAUGGGUUAAAGGAUUUA..................... 1 0.00346 ....................................................GAUGGGUUAAAGGAUUUACCU.................. 1 0.00119 .....................................................AUGGGUUAAAGGAUUUACCUGAGGCCA........... 3 0.0134 ......................................................UGGGUUAAAGGAUUUACCUGAGGCCA........... 20 0.477 ......................................................UGGGUUAAAGGAUUUACCUGAGGC............. 1 0.011 ........................................................GGUUAAAGGAUUUACCUGAGGCCA........... 15 0.0439 ........................................................GGUUAAAGGAUUUACCUGAGGC............. 5 0.0698 .........................................................GUUAAAGGAUUUACCUGAGGCC............ 7 0.0583 .........................................................GUUAAAGGAUUUACCUGAGGCCA........... 2 0.00239 .........................................................GUUAAAGGAUUUACCUGAGG.............. 1 0.012 ..........................................................UUAAAGGAUUUACCUGAGGCCA........... 27 0.125 ..........................................................UUAAAGGAUUUACCUGAGGCC............ 7 0.0376 ..........................................................UUAAAGGAUUUACCUGAGGCCAAU......... 6 0.163 ..........................................................UUAAAGGAUUUACCUGAGGC............. 4 0.0672 ..........................................................UUAAAGGAUUUACCUGAGGCCAA.......... 4 0.00757 ..........................................................UUAAAGGAUUUACCUGAGGCCAAUA........ 2 0.00963 ..........................................................UUAAAGGAUUUACCUGAGG.............. 1 0.00259 ...........................................................UAAAGGAUUUACCUGAGGCCA........... 15 1.25 ...........................................................UAAAGGAUUUACCUGAGGCC............ 7 0.0369 ...........................................................UAAAGGAUUUACCUGAGGCCAAU......... 5 0.167 ...........................................................UAAAGGAUUUACCUGAGGCCAA.......... 2 0.00239 ...........................................................UAAAGGAUUUACCUGAGGC............. 1 0.0118 ............................................................AAAGGAUUUACCUGAGGCCA........... 82 0.383 ............................................................AAAGGAUUUACCUGAGGCCAAU......... 33 0.361 ............................................................AAAGGAUUUACCUGAGGCC............ 33 0.185 ............................................................AAAGGAUUUACCUGAGGCCAAUA........ 7 0.0153 ............................................................AAAGGAUUUACCUGAGGCCAA.......... 2 0.0169 .............................................................AAGGAUUUACCUGAGGCCA........... 71 0.354 .............................................................AAGGAUUUACCUGAGGCCAAU......... 8 0.026 .............................................................AAGGAUUUACCUGAGGCCAAUA........ 2 0.00404 .............................................................AAGGAUUUACCUGAGGCCAA.......... 2 0.0138 ..............................................................AGGAUUUACCUGAGGCC............ 1632 8.89 ..............................................................AGGAUUUACCUGAGGCCAA.......... 2 0.011 ..............................................................AGGAUUUACCUGAGGCCA........... 2 0.0231 .................................................................AUUUACCUGAGGCCAAU......... 1 0.00259 AACAGUUCUUGGCCAAGGAUGAGAACUCUAACCUGACUGGAUACGCUGCUGUGAUGGGUUAAAGGAUUUACCUGAGGCCAAUAGAACAGGC ....((((((((((.(((.((((..((.((((((......((.(((....))))))))))).))..)))))))..)))))..))))).... (-27.40)

       mmu-miR-3096b-5p                                 mmu-miR-3096b-3p                     Count     RPM (mean number of reads per million)
.........UGGCCAAGGAUGAGAAC.................................................................  246       1.49
.........UGGCCAAGGAUGAGAACUCUAACCUGACU.....................................................  162       0.739
.........UGGCCAAGGAUGAGAACUC...............................................................  60        0.33
.........UGGCCAAGGAUGAGAACUCUAACCUGAC......................................................  48        0.216
.........UGGCCAAGGAUGAGAACUCUAACCUGA.......................................................  23        0.113
.........UGGCCAAGGAUGAGAACUCUAACCUGACUG....................................................  22        0.1
.........UGGCCAAGGAUGAGAACU................................................................  19        0.224
.........UGGCCAAGGAUGAGAACUCU..............................................................  19        0.141
.........UGGCCAAGGAUGAGAACUCUAA............................................................  15        0.0652
.........UGGCCAAGGAUGAGAACUCUAAC...........................................................  8         0.0383
.........UGGCCAAGGAUGAGAACUCUA.............................................................  8         0.0802
.........UGGCCAAGGAUGAGAACUCUAACCU.........................................................  2         0.00801
.........UGGCCAAGGAUGAGAACUCUAACC..........................................................  1         0.0145
..........GGCCAAGGAUGAGAACUCUAACCUGACU.....................................................  535       2.4
..........GGCCAAGGAUGAGAACUCUAACCUGAC......................................................  248       0.995
..........GGCCAAGGAUGAGAACUCUAACCUGA.......................................................  132       0.572
..........GGCCAAGGAUGAGAACUCUAACCUGACUG....................................................  52        0.234
..........GGCCAAGGAUGAGAACUCU..............................................................  33        0.159
..........GGCCAAGGAUGAGAACUCUAACCUGACUGG...................................................  26        0.119
..........GGCCAAGGAUGAGAACUCUAACC..........................................................  20        0.0873
..........GGCCAAGGAUGAGAACU................................................................  13        0.243
..........GGCCAAGGAUGAGAACUCUAACCUG........................................................  5         0.0244
...........GCCAAGGAUGAGAACUCUAACCUGACU.....................................................  118       0.509
...........GCCAAGGAUGAGAACUCUAACCUGAC......................................................  44        0.208
...........GCCAAGGAUGAGAACUCUAACCUGA.......................................................  20        0.0829
...........GCCAAGGAUGAGAACUCUAACCUGACUG....................................................  17        0.0819
...........GCCAAGGAUGAGAACUCUAACCUGACUGG...................................................  8         0.0359
...........GCCAAGGAUGAGAACUCUAACCUGACUGGA..................................................  7         0.0328
...........GCCAAGGAUGAGAACUCUAAC...........................................................  6         0.0241
...........GCCAAGGAUGAGAACUCU..............................................................  1         0.00293
............CCAAGGAUGAGAACUCUAACCUGACU.....................................................  8         0.0401
............CCAAGGAUGAGAACUCUAACCUGACUGGAU.................................................  2         0.00918
............CCAAGGAUGAGAACUCUAACCUGACUGG...................................................  1         0.0039
............CCAAGGAUGAGAACUCUAACCUGAC......................................................  1         0.00571
............CCAAGGAUGAGAACUCU..............................................................  1         0.0118
..............AAGGAUGAGAACUCUAACCUGACU.....................................................  2         0.011
...............AGGAUGAGAACUCUAACCUGACUGGAUA................................................  1         0.00436
...............AGGAUGAGAACUCUAACCUGACUGGAUACG..............................................  1         0.00354
.................GAUGAGAACUCUAACCUGACUGGAU.................................................  1         0.00284
..................AUGAGAACUCUAACCUGACUGGAU.................................................  2         0.0119
..................AUGAGAACUCUAACCUGACUGGAUA................................................  2         0.00761
..................AUGAGAACUCUAACCUGACUGGA..................................................  1         0.00844
..................AUGAGAACUCUAACCUGACU.....................................................  1         0.00247
..................AUGAGAACUCUAACCUGACUGGAUAC...............................................  1         0.00247
...................UGAGAACUCUAACCUGACUGGAUACGC.............................................  1         0.00247
............................UAACCUGACUGGAUACGCUGCUGUGAUGG..................................  2         0.00478
............................UAACCUGACUGGAUACGCUGCUGUGAUG...................................  2         0.00542
............................UAACCUGACUGGAUACGCUGCUGUGAUGGG.................................  2         0.00709
............................UAACCUGACUGGAUACGCUGCUGUGAU....................................  1         0.00354
.............................AACCUGACUGGAUACGCUGCUGUGAUGGGU................................  6         0.0201
.............................AACCUGACUGGAUACGCUGCUG........................................  1         0.00239
.............................AACCUGACUGGAUACGCUGCU.........................................  1         0.00354
..............................ACCUGACUGGAUACGCUGCUGUGAUGGG.................................  1         0.0053
................................CUGACUGGAUACGCUGCUGUGA.....................................  1         0.00571
.................................UGACUGGAUACGCUGCUGUGAUGGG.................................  1         0.00513
...................................ACUGGAUACGCUGCUGUGAUGGGU................................  2         0.0143
.......................................GAUACGCUGCUGUGAUGGGUU...............................  1         0.00513
.......................................GAUACGCUGCUGUGAUGGGUUAAAGG..........................  1         0.00513
........................................AUACGCUGCUGUGAUGGGUUAA.............................  1         0.00388
........................................AUACGCUGCUGUGAUGGGUUA..............................  1         0.00436
..........................................ACGCUGCUGUGAUGGGUUAA.............................  1         0.00366
...........................................CGCUGCUGUGAUGGGUUAA.............................  2         0.0102
............................................GCUGCUGUGAUGGGUUAAAGGAUUUA.....................  3         0.0102
............................................GCUGCUGUGAUGGGUUAAAGGAU........................  1         0.00366
.............................................CUGCUGUGAUGGGUUAAAGGAUUUA.....................  11        0.0318
.............................................CUGCUGUGAUGGGUUAAAGGAUUU......................  6         0.0205
.............................................CUGCUGUGAUGGGUUAAAGG..........................  2         0.0162
.............................................CUGCUGUGAUGGGUUAA.............................  2         0.0237
.............................................CUGCUGUGAUGGGUUAAAGGAUU.......................  1         0.014
..............................................UGCUGUGAUGGGUUAAAGGAUUUA.....................  2         0.00643
................................................CUGUGAUGGGUUAAAGGAUUUACC...................  1         0.00247
................................................CUGUGAUGGGUUAAAGGAUUUA.....................  1         0.00346
....................................................GAUGGGUUAAAGGAUUUACCU..................  1         0.00119
.....................................................AUGGGUUAAAGGAUUUACCUGAGGCCA...........  3         0.0134
......................................................UGGGUUAAAGGAUUUACCUGAGGCCA...........  20        0.477
......................................................UGGGUUAAAGGAUUUACCUGAGGC.............  1         0.011
........................................................GGUUAAAGGAUUUACCUGAGGCCA...........  15        0.0439
........................................................GGUUAAAGGAUUUACCUGAGGC.............  5         0.0698
.........................................................GUUAAAGGAUUUACCUGAGGCC............  7         0.0583
.........................................................GUUAAAGGAUUUACCUGAGGCCA...........  2         0.00239
.........................................................GUUAAAGGAUUUACCUGAGG..............  1         0.012
..........................................................UUAAAGGAUUUACCUGAGGCCA...........  27        0.125
..........................................................UUAAAGGAUUUACCUGAGGCC............  7         0.0376
..........................................................UUAAAGGAUUUACCUGAGGCCAAU.........  6         0.163
..........................................................UUAAAGGAUUUACCUGAGGC.............  4         0.0672
..........................................................UUAAAGGAUUUACCUGAGGCCAA..........  4         0.00757
..........................................................UUAAAGGAUUUACCUGAGGCCAAUA........  2         0.00963
..........................................................UUAAAGGAUUUACCUGAGG..............  1         0.00259
...........................................................UAAAGGAUUUACCUGAGGCCA...........  15        1.25
...........................................................UAAAGGAUUUACCUGAGGCC............  7         0.0369
...........................................................UAAAGGAUUUACCUGAGGCCAAU.........  5         0.167
...........................................................UAAAGGAUUUACCUGAGGCCAA..........  2         0.00239
...........................................................UAAAGGAUUUACCUGAGGC.............  1         0.0118
............................................................AAAGGAUUUACCUGAGGCCA...........  82        0.383
............................................................AAAGGAUUUACCUGAGGCCAAU.........  33        0.361
............................................................AAAGGAUUUACCUGAGGCC............  33        0.185
............................................................AAAGGAUUUACCUGAGGCCAAUA........  7         0.0153
............................................................AAAGGAUUUACCUGAGGCCAA..........  2         0.0169
.............................................................AAGGAUUUACCUGAGGCCA...........  71        0.354
.............................................................AAGGAUUUACCUGAGGCCAAU.........  8         0.026
.............................................................AAGGAUUUACCUGAGGCCAAUA........  2         0.00404
.............................................................AAGGAUUUACCUGAGGCCAA..........  2         0.0138
..............................................................AGGAUUUACCUGAGGCC............  1632      8.89
..............................................................AGGAUUUACCUGAGGCCAA..........  2         0.011
..............................................................AGGAUUUACCUGAGGCCA...........  2         0.0231
.................................................................AUUUACCUGAGGCCAAU.........  1         0.00259
AACAGUUCUUGGCCAAGGAUGAGAACUCUAACCUGACUGGAUACGCUGCUGUGAUGGGUUAAAGGAUUUACCUGAGGCCAAUAGAACAGGC
....((((((((((.(((.((((..((.((((((......((.(((....))))))))))).))..)))))))..)))))..))))).... (-27.40)

miRBase

Deep sequencing reads for stem-loop sequence MI0016969

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).