miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0016265
Stem-loop ID	tca-mir-3808
Reads	tca-miR-3808-5p tca-miR-3808-3p Count RPM (mean number of reads per million) ............................UCUCAUAUUCGCACUUGACAU............................................................... 2 0.516 ..............................UCAUAUUCGCACUUGACAUAUU............................................................ 82 21.2 ..............................UCAUAUUCGCACUUGACAUAU............................................................. 68 17.5 ..............................UCAUAUUCGCACUUGACA................................................................ 40 10.3 ..............................UCAUAUUCGCACUUGACAUA.............................................................. 24 6.19 ..............................UCAUAUUCGCACUUGACAU............................................................... 18 4.64 ..............................UCAUAUUCGCACUUGACAUAUUU........................................................... 2 0.516 ..............................UCAUAUUCGCACUUGACAUAUUUUGG........................................................ 2 0.516 ...............................CAUAUUCGCACUUGACAUAUU............................................................ 8 2.06 ...............................CAUAUUCGCACUUGACAUA.............................................................. 4 1.03 ...............................CAUAUUCGCACUUGACAUAU............................................................. 4 1.03 ...............................CAUAUUCGCACUUGACAU............................................................... 2 0.516 ...............................CAUAUUCGCACUUGACAUAUUU........................................................... 2 0.516 ................................AUAUUCGCACUUGACAUAUU............................................................ 2 0.516 ...................................................................UAUGUACACGUGUGGAUAUGGGG...................... 10 2.58 ...................................................................UAUGUACACGUGUGGAUAUGGG....................... 4 1.03 ...................................................................UAUGUACACGUGUGGAUAU.......................... 4 1.03 ...................................................................UAUGUACACGUGUGGAUAUGGGGCCG................... 2 0.516 ...................................................................UAUGUACACGUGUGGAUA........................... 2 0.516 ....................................................................AUGUACACGUGUGGAUAUGGG....................... 2 0.516 ....................................................................AUGUACACGUGUGGAUAUGGGG...................... 2 0.516 UUUAAGAGGGUUUUAACCAAUUUUUCAGUCUCAUAUUCGCACUUGACAUAUUUUGGAUUAAAUAAAAUAUGUACACGUGUGGAUAUGGGGCCGAAGUUGGUACAGUCAACGG .....((..((....(((((((((...(((((((((((((((.((((((((((((.......)))))))))).)).))))))))))))))).)))))))))))..))..... (-41.20)

                             tca-miR-3808-5p                      tca-miR-3808-3p                                 Count     RPM (mean number of reads per million)
............................UCUCAUAUUCGCACUUGACAU...............................................................  2         0.516
..............................UCAUAUUCGCACUUGACAUAUU............................................................  82        21.2
..............................UCAUAUUCGCACUUGACAUAU.............................................................  68        17.5
..............................UCAUAUUCGCACUUGACA................................................................  40        10.3
..............................UCAUAUUCGCACUUGACAUA..............................................................  24        6.19
..............................UCAUAUUCGCACUUGACAU...............................................................  18        4.64
..............................UCAUAUUCGCACUUGACAUAUUU...........................................................  2         0.516
..............................UCAUAUUCGCACUUGACAUAUUUUGG........................................................  2         0.516
...............................CAUAUUCGCACUUGACAUAUU............................................................  8         2.06
...............................CAUAUUCGCACUUGACAUA..............................................................  4         1.03
...............................CAUAUUCGCACUUGACAUAU.............................................................  4         1.03
...............................CAUAUUCGCACUUGACAU...............................................................  2         0.516
...............................CAUAUUCGCACUUGACAUAUUU...........................................................  2         0.516
................................AUAUUCGCACUUGACAUAUU............................................................  2         0.516
...................................................................UAUGUACACGUGUGGAUAUGGGG......................  10        2.58
...................................................................UAUGUACACGUGUGGAUAUGGG.......................  4         1.03
...................................................................UAUGUACACGUGUGGAUAU..........................  4         1.03
...................................................................UAUGUACACGUGUGGAUAUGGGGCCG...................  2         0.516
...................................................................UAUGUACACGUGUGGAUA...........................  2         0.516
....................................................................AUGUACACGUGUGGAUAUGGG.......................  2         0.516
....................................................................AUGUACACGUGUGGAUAUGGGG......................  2         0.516
UUUAAGAGGGUUUUAACCAAUUUUUCAGUCUCAUAUUCGCACUUGACAUAUUUUGGAUUAAAUAAAAUAUGUACACGUGUGGAUAUGGGGCCGAAGUUGGUACAGUCAACGG
.....((..((....(((((((((...(((((((((((((((.((((((((((((.......)))))))))).)).))))))))))))))).)))))))))))..))..... (-41.20)

miRBase

Deep sequencing reads for stem-loop sequence MI0016265

Filter reads

References

References
1	PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).