miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0014563
Stem-loop ID	aly-MIR172a
Reads	aly-miR172a-5p aly-miR172a-3p Count RPM (mean number of reads per million) .........................GUGGCAUCAUCAAGAUUCACA....................................................................................................... 5 208 .........................GUGGCAUCAUCAAGAUUCAC........................................................................................................ 3 125 .........................GUGGCAUCAUCAAGAUUCA......................................................................................................... 1 41.6 .................................................................................................GAGAAUCUUGAUGAUGCUGCA............................... 6 250 .................................................................................................GAGAAUCUUGAUGAUGCUGCAU.............................. 2 83.2 ..................................................................................................AGAAUCUUGAUGAUGCUGCAU.............................. 2224 9.26e+04 ..................................................................................................AGAAUCUUGAUGAUGCUGCA............................... 3 125 ..................................................................................................AGAAUCUUGAUGAUGCUGC................................ 1 41.6 ..................................................................................................AGAAUCUUGAUGAUGCUGCAUC............................. 1 41.6 ...................................................................................................GAAUCUUGAUGAUGCUGCAU.............................. 16 666 ....................................................................................................AAUCUUGAUGAUGCUGCAU.............................. 1 41.6 GGAGCCACGGUCGCUGUUUGCUGCUGUGGCAUCAUCAAGAUUCACAUCUGUUGAUGGACGGUGGUGAUUCGCUCUCCCCAAAGUUCUCUAUGAAAAUGAGAAUCUUGAUGAUGCUGCAUCGGCAAUCAACGGCUAUUCUUUUUCUCUCC ((((....(((((.((.((((((.((..(((((((((((((((.(((.....((.((((..(((.((.......)).)))..)))))).......))).)))))))))))))))..)).)))))).)).)))))...........)))) (-58.16)

                        aly-miR172a-5p                                                           aly-miR172a-3p                                        Count     RPM (mean number of reads per million)
.........................GUGGCAUCAUCAAGAUUCACA.......................................................................................................  5         208
.........................GUGGCAUCAUCAAGAUUCAC........................................................................................................  3         125
.........................GUGGCAUCAUCAAGAUUCA.........................................................................................................  1         41.6
.................................................................................................GAGAAUCUUGAUGAUGCUGCA...............................  6         250
.................................................................................................GAGAAUCUUGAUGAUGCUGCAU..............................  2         83.2
..................................................................................................AGAAUCUUGAUGAUGCUGCAU..............................  2224      9.26e+04
..................................................................................................AGAAUCUUGAUGAUGCUGCA...............................  3         125
..................................................................................................AGAAUCUUGAUGAUGCUGC................................  1         41.6
..................................................................................................AGAAUCUUGAUGAUGCUGCAUC.............................  1         41.6
...................................................................................................GAAUCUUGAUGAUGCUGCAU..............................  16        666
....................................................................................................AAUCUUGAUGAUGCUGCAU..............................  1         41.6
GGAGCCACGGUCGCUGUUUGCUGCUGUGGCAUCAUCAAGAUUCACAUCUGUUGAUGGACGGUGGUGAUUCGCUCUCCCCAAAGUUCUCUAUGAAAAUGAGAAUCUUGAUGAUGCUGCAUCGGCAAUCAACGGCUAUUCUUUUUCUCUCC
((((....(((((.((.((((((.((..(((((((((((((((.(((.....((.((((..(((.((.......)).)))..)))))).......))).)))))))))))))))..)).)))))).)).)))))...........)))) (-58.16)

miRBase

Deep sequencing reads for stem-loop sequence MI0014563

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References

References
1	PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).