Deep sequencing reads for stem-loop sequence MI0014423

Stem-loop ID

bmo-mir-3363

Reads

                                                                      bmo-miR-3363                                          Count     RPM (mean number of reads per million)
...................................................................UCAUACGUAUUUGUGUACUGCGUUUA..............................  21        6.15
...................................................................UCAUACGUAUUUGUGUACUGCGUUUAC.............................  13        3.04
...................................................................UCAUACGUAUUUGUGUACU.....................................  3         1.33
...................................................................UCAUACGUAUUUGUGUACUGCGU.................................  1         0.233
...................................................................UCAUACGUAUUUGUGUACUGCGUUUACG............................  1         0.233
...................................................................UCAUACGUAUUUGUGUACUGCGUUU...............................  1         0.233
....................................................................CAUACGUAUUUGUGUACUGCGUUUA..............................  1         0.233
................................................................................UGUACUGCGUUUACGGGAAUU......................  1         0.233
.....................................................................................UGCGUUUACGGGAAUUCU....................  1         0.233
......................................................................................GCGUUUACGGGAAUUCUUUUUAAGAU...........  1         0.861
........................................................................................GUUUACGGGAAUUCUUUUUA...............  1         0.861
UCAAAUGUUAAGUUCACUGUGUAUCCCUUGUAGUUAAAAUAAAUAAAUAUAAUAACCUUUAUGUUAUUCAUACGUAUUUGUGUACUGCGUUUACGGGAAUUCUUUUUAAGAUCUUCCCAUUUU
..(((((..(((.((.....(..((((.((((((....(((((((..(((((((((......)))))).)))..)))))))..)))))).....))))...).......)).)))..))))). (-22.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	7	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	47	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	5	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).