Deep sequencing reads for stem-loop sequence MI0014256

Stem-loop ID bmo-mir-3204a
Reads
                        bmo-miR-3204a-5p              bmo-miR-3204a-3p                                       Count     RPM (mean number of reads per million)
........CAAUGUAGACAUCAAGGCC................................................................................  1         0.233
...........................CGCGUCAUAAACUUCCCAU.............................................................  5         1.8
...........................CGCGUCAUAAACUUCCCAUAU...........................................................  3         1.95
...........................CGCGUCAUAAACUUCCCAUAUGAU........................................................  2         0.467
...........................CGCGUCAUAAACUUCCCAUA............................................................  2         1.09
...........................CGCGUCAUAAACUUCCCA..............................................................  1         0.233
............................GCGUCAUAAACUUCCCAU.............................................................  1         0.233
........................................................AUAUGGGAGUUUAUGACUUA...............................  1         0.227
...........................................................UGGGAGUUUAUGACUUAGGCUU..........................  1         0.233
GCAAGAAUCAAUGUAGACAUCAAGGCCCGCGUCAUAAACUUCCCAUAUGAUUUCCCAUAUGGGAGUUUAUGACUUAGGCUUCGUUGCCUCUGUCGUCACCGUCUUGA
.(((((....(((((((((.(.(((((...((((((((((.((((((((......))))))))))))))))))...))))).).))..)))).))).....))))). (-40.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000268 4whole body GEO : GSM449725 5th-instar day-3 larvae [ Liu S et al.]
ER0000000269 23anterior silk glands GEO : GSM449726 5th-instar day-3 larvae [ Liu S et al.]
ER0000000270 6posterior silk glands GEO : GSM449727 5th-instar day-3 larvae [ Liu S et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).