Deep sequencing reads for stem-loop sequence MI0014226

Stem-loop ID hsa-mir-3184
Reads 
         hsa-miR-3184-5p                  hsa-miR-3184-3p                    Count     RPM (mean number of reads per million)
.........UGAGGGGCCUCAGACCGAGCUUU...........................................  44        7.48
.........UGAGGGGCCUCAGACCGAGCUUUU..........................................  33        231
AAGCAAGACUGAGGGGCCUCAGACCGAGCUUUUGGAAAAUAGAAAAGUCUCGCUCUCUGCCCCUCAGCCUAACUU
(((..((.(((((((((...(((.(((((((((.........))))).)))).)))..))))))))).))..))) (-30.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000103 2melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000108 7melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000110 26melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 6melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000114 7melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000152 1squamous cell GEO : GSM532888 [ Witten D et al.]
ER0000000155 1 GEO : GSM532891 normal cervix [ Witten D et al.]
ER0000000159 1 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000163 1 GEO : GSM532899 normal cervix [ Witten D et al.]
ER0000000167 5 GEO : GSM532903 normal cervix [ Witten D et al.]
ER0000000172 1squamous cell GEO : GSM532908 [ Witten D et al.]
ER0000000173 1 GEO : GSM532909 normal cervix [ Witten D et al.]
ER0000000177 14 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000179 5 GEO : GSM532915 normal cervix [ Witten D et al.]
ER0000000185 2 GEO : GSM532921 normal cervix [ Witten D et al.]
ER0000000187 2 GEO : GSM532923 normal cervix [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).