Deep sequencing reads for stem-loop sequence MI0014031

Stem-loop ID mmu-mir-3069
Reads 
 mmu-miR-3069-5p                         mmu-miR-3069-3p            Count     RPM (mean number of reads per million)
.UUGGCAGUCAAGAUAUUGUUUAGC........................................  30        0.522
.UUGGCAGUCAAGAUAUUGUUUAG.........................................  9         0.111
.UUGGCAGUCAAGAUAUUGUUU...........................................  7         0.0267
.UUGGCAGUCAAGAUAUUGUUUA..........................................  2         0.0213
.UUGGCAGUCAAGAUAUUGUUUAGCA.......................................  1         0.015
..UGGCAGUCAAGAUAUUGUUUAGC........................................  3         0.0205
..UGGCAGUCAAGAUAUUGUUUAGCA.......................................  2         0.0327
..UGGCAGUCAAGAUAUUGUUUA..........................................  1         0.00172
..UGGCAGUCAAGAUAUUGUUUAG.........................................  1         0.126
.....CAGUCAAGAUAUUGUUUAGC........................................  1         0.0159
......AGUCAAGAUAUUGUUUAGC........................................  1         0.104
......................AGCAGACGGAGCGGUUUCU........................  1         0.00537
........................CAGACGGAGCGGUUUCUGUU.....................  10        0.0662
........................CAGACGGAGCGGUUUCUGU......................  3         0.0224
........................CAGACGGAGCGGUUUCUGUUGGACA................  1         0.00711
.........................AGACGGAGCGGUUUCUGU......................  1         0.00507
..........................GACGGAGCGGUUUCUGUUGGACAC...............  1         0.0574
..............................GAGCGGUUUCUGUUGGAC.................  1         0.0153
..............................GAGCGGUUUCUGUUGGACAC...............  1         0.0145
........................................UGUUGGACACUAAGUACUGC.....  1         0.00359
..........................................UUGGACACUAAGUACUGCCACA.  25        0.248
..........................................UUGGACACUAAGUACUGCCACAA  5         0.0186
..........................................UUGGACACUAAGUACUGCCA...  2         0.0215
..........................................UUGGACACUAAGUACUGCCAC..  2         0.00884
...........................................UGGACACUAAGUACUGCCACAA  13        0.083
...........................................UGGACACUAAGUACUGCCACA.  7         0.0227
............................................GGACACUAAGUACUGCCACAA  1         0.0042
CUUGGCAGUCAAGAUAUUGUUUAGCAGACGGAGCGGUUUCUGUUGGACACUAAGUACUGCCACAA
..(((((((.....((.(((((((((((..........))))))))))).))...)))))))... (-20.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 1ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000036 1brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 6brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 4brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 3brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 29brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000043 1whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000045 1whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 1whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 4whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 4whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 3whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 3whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 3whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 9whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 1embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000055 3embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 2embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 1embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000217 1bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 1spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 1spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 2spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 1lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 2bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 4bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 2bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000236 11spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 1thymus GEO : GSM539856
ER0000000239 1spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 2spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 4lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 3lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 1lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 2spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 2lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000247 4 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 2 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 7brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 2lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000255 2skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 1skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000259 1ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 2spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 1lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).