Deep sequencing reads for stem-loop sequence MI0014020

Stem-loop ID mmu-mir-3057
Reads 
             mmu-miR-3057-5p                            mmu-miR-3057-3p                       Count     RPM (mean number of reads per million)
.............AUUGGAGCUGAGAUUCUGCGGGAU......................................................  283       1.27
.............AUUGGAGCUGAGAUUCUGCGGGAUG.....................................................  194       0.775
.............AUUGGAGCUGAGAUUCUGCGGGAUGG....................................................  120       0.483
.............AUUGGAGCUGAGAUUCUGCGGGA.......................................................  76        0.36
.............AUUGGAGCUGAGAUUCUGCGGGAUGGA...................................................  44        0.215
.............AUUGGAGCUGAGAUUCUGCG..........................................................  37        0.322
.............AUUGGAGCUGAGAUUCUGCGG.........................................................  33        0.201
.............AUUGGAGCUGAGAUUCUGC...........................................................  30        0.134
.............AUUGGAGCUGAGAUUCUGCGGG........................................................  15        0.0797
.............AUUGGAGCUGAGAUUCUGCGGGAUGGAU..................................................  15        0.0843
..............UUGGAGCUGAGAUUCUGCGGGAUGGA...................................................  10        0.0359
..............UUGGAGCUGAGAUUCUGCGGGAUGG....................................................  5         0.0202
..............UUGGAGCUGAGAUUCUGCGGGAU......................................................  4         0.0414
..............UUGGAGCUGAGAUUCUGCGGGAUGGAU..................................................  3         0.00763
..............UUGGAGCUGAGAUUCUGCGGGAUG.....................................................  3         0.0111
..............UUGGAGCUGAGAUUCUGCGGG........................................................  1         0.00284
..............UUGGAGCUGAGAUUCUGCG..........................................................  1         0.00571
...............UGGAGCUGAGAUUCUGCGGGAUGG....................................................  3         0.0135
...............UGGAGCUGAGAUUCUGCGGGAU......................................................  1         0.00388
...............UGGAGCUGAGAUUCUGCGGGAUG.....................................................  1         0.00303
................GGAGCUGAGAUUCUGCGGGAUGGAU..................................................  5         0.0189
................GGAGCUGAGAUUCUGCGGGAUGGA...................................................  2         0.00906
................GGAGCUGAGAUUCUGCGGGAUGG....................................................  2         0.0144
.......................................AUUAGGAGUAUAUUGUCC..................................  1         0.0118
.......................................................CCUCCCACAGGCCCAGCUCAUAG.............  1         0.00571
........................................................CUCCCACAGGCCCAGCUCAUAG.............  15        0.0553
........................................................CUCCCACAGGCCCAGCUCAUAGC............  7         0.099
........................................................CUCCCACAGGCCCAGCUCAU...............  3         0.0115
........................................................CUCCCACAGGCCCAGCUCAUA..............  1         0.00304
.........................................................UCCCACAGGCCCAGCUCAUAGC............  20        0.272
.........................................................UCCCACAGGCCCAGCUCAUAG.............  15        0.342
.........................................................UCCCACAGGCCCAGCUCAUA..............  2         0.0047
.........................................................UCCCACAGGCCCAGCUCAUAGCA...........  1         0.00844
.........................................................UCCCACAGGCCCAGCUCA................  1         0.00119
UGAAGGUGUGUGCAUUGGAGCUGAGAUUCUGCGGGAUGGAUUAGGAGUAUAUUGUCCUCCCACAGGCCCAGCUCAUAGCACAAGCCAUCGG
.((.(((.(((((....((((((.(...(((.((((.((((............)))))))).))).).))))))...))))).))).)).. (-38.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 1ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 1ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000034 1testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000036 2brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 8brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 9brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 1brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 33brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000042 2whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 2whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000045 11whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 9whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 6whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 10whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 4whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 8whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 3whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 29whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 2embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 6embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 5embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 1embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000058 7embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 3embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 4embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 6bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 3bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 22spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 23spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 20spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 44spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 43spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 37spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 19spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 2peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 3spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 21lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 29lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 25bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 8bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 124bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 10peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 2peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 12bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 13bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 40spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 4thymus GEO : GSM539856
ER0000000238 3spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 4spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 16spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 13lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 72lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 48lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 69spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 6lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 3lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 19 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 7 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 1heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 13brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 1liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 11kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 1pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 2skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 2skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 2salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 1testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 4ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 5spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 31lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).