Deep sequencing reads for stem-loop sequence MI0013564

Stem-loop ID cqu-mir-281-1
Reads
                         cqu-miR-281-5p                      cqu-miR-281-3p                                  Count     RPM (mean number of reads per million)
........................AAAGAGAGCUAUCCGUCGAC...............................................................  832       1.55e+03
........................AAAGAGAGCUAUCCGUCGACA..............................................................  66        123
........................AAAGAGAGCUAUCCGUCGACAGU............................................................  46        85.7
........................AAAGAGAGCUAUCCGUCGACAG.............................................................  35        65.2
........................AAAGAGAGCUAUCCGUCGACAGUAGGG........................................................  4         7.46
........................AAAGAGAGCUAUCCGUCGA................................................................  4         7.46
........................AAAGAGAGCUAUCCGUCG.................................................................  2         3.73
........................AAAGAGAGCUAUCCGUCGACAGUAG..........................................................  2         3.73
........................AAAGAGAGCUAUCCGUCGACAGUAGG.........................................................  1         1.86
........................AAAGAGAGCUAUCCGUCGACAGUA...........................................................  1         1.86
........................AAAGAGAGCUAUCCGUCGACAGUAGGGA.......................................................  1         1.86
.........................AAGAGAGCUAUCCGUCGAC...............................................................  3870      7.21e+03
.........................AAGAGAGCUAUCCGUCGACAGU............................................................  1939      3.61e+03
.........................AAGAGAGCUAUCCGUCGACAG.............................................................  644       1.2e+03
.........................AAGAGAGCUAUCCGUCGACA..............................................................  419       781
.........................AAGAGAGCUAUCCGUCGACAGUA...........................................................  280       522
.........................AAGAGAGCUAUCCGUCGACAGUAG..........................................................  55        103
.........................AAGAGAGCUAUCCGUCGA................................................................  5         9.32
.........................AAGAGAGCUAUCCGUCGACAGUAGG.........................................................  1         1.86
..........................AGAGAGCUAUCCGUCGACA..............................................................  5         9.32
..........................AGAGAGCUAUCCGUCGAC...............................................................  4         7.46
..........................AGAGAGCUAUCCGUCGACAG.............................................................  2         3.73
..........................AGAGAGCUAUCCGUCGACAGU............................................................  2         3.73
...........................GAGAGCUAUCCGUCGACAGUA...........................................................  1         1.86
.............................................................CUGUCAUGGAAUUGCUCUCUUU........................  13        24.2
.............................................................CUGUCAUGGAAUUGCUCUCUU.........................  4         7.46
.............................................................CUGUCAUGGAAUUGCUCUCUUUA.......................  2         3.73
..............................................................UGUCAUGGAAUUGCUCUCUUU........................  32        59.6
..............................................................UGUCAUGGAAUUGCUCUCUUUA.......................  17        31.7
..............................................................UGUCAUGGAAUUGCUCUCUUUAU......................  7         13
..............................................................UGUCAUGGAAUUGCUCUCUU.........................  4         7.46
..............................................................UGUCAUGGAAUUGCUCUCU..........................  2         3.73
UUCUGCAGUUUCGAAUGUGAAAAUAAAGAGAGCUAUCCGUCGACAGUAGGGAUAUGAUUCACUGUCAUGGAAUUGCUCUCUUUAUGUACAAUUCGAUAUUCAACAGU
..(((.(((.(((((((((...(((((((((((..(((((.((((((..(.......)..)))))))))))...))))))))))).))).)))))).)))...))). (-40.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000272 9428whole body [ Skalsky RL et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).