miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0013273
Stem-loop ID	osa-MIR2931
Reads	osa-miR2931 Count RPM (mean number of reads per million) ..............................................................AAAAAUUUAUCGAUCAGCGGUUGC.................................................................... 24 7.54 ...............................................................AAAAUUUAUCGAUCAGCGGUUGCA................................................................... 24 7.69 .................................................................AAUUUAUCGAUCAGCGGUUGCAUU................................................................. 24 7.54 ................................................................................................................AUAUAUUGAUAUACUUGUGGUACA.................. 1 15.8 AAAAAACAAUGUUUGCCACUUCUUUAUUUUAUUGAUGCAUUUAUGUCUUUAUUGUUGAUGUCAAAAAUUUAUCGAUCAGCGGUUGCAUUGAAAAUUUAGCUUGAAGUUAUAUAUAUAUUGAUAUACUUGUGGUACAAUUAUGAACCCCCUCCAU ......((((((.((..(((((.(((..((.(..(((((...........(((((((((...............))))))))))))))..).))..)))...)))))..))...))))))..........(((.((....)).)))........ (-22.66)

                                                osa-miR2931                                                                                                 Count     RPM (mean number of reads per million)
..............................................................AAAAAUUUAUCGAUCAGCGGUUGC....................................................................  24        7.54
...............................................................AAAAUUUAUCGAUCAGCGGUUGCA...................................................................  24        7.69
.................................................................AAUUUAUCGAUCAGCGGUUGCAUU.................................................................  24        7.54
................................................................................................................AUAUAUUGAUAUACUUGUGGUACA..................  1         15.8
AAAAAACAAUGUUUGCCACUUCUUUAUUUUAUUGAUGCAUUUAUGUCUUUAUUGUUGAUGUCAAAAAUUUAUCGAUCAGCGGUUGCAUUGAAAAUUUAGCUUGAAGUUAUAUAUAUAUUGAUAUACUUGUGGUACAAUUAUGAACCCCCUCCAU
......((((((.((..(((((.(((..((.(..(((((...........(((((((((...............))))))))))))))..).))..)))...)))))..))...))))))..........(((.((....)).)))........ (-22.66)

Accession

Read count

Tissue

Link

Comment

Reference

GEO : GSM407072

GEO : GSM571077

strain: indica 93-11, age: 12-day-old, stress: control

[ Li T et al.]

ER0000000202

whole body

GEO : GSM571078

strain: indica 93-11, stress: H2O2

[ Li T et al.]

miRBase

Deep sequencing reads for stem-loop sequence MI0013273

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References

References
1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).