Deep sequencing reads for stem-loop sequence MI0012323

Stem-loop ID

bmo-mir-2768

Reads

         bmo-miR-2768-5p                                        bmo-miR-2768-3p                     Count     RPM (mean number of reads per million)
..........CGGUGAAAUAUUUUGACCAAUU.................................................................  4         0.934
..........CGGUGAAAUAUUUUGACCAAU..................................................................  1         0.233
.................................................................AUUGGUUAAGAUAUUGCAUCGU..........  183       43.3
.................................................................AUUGGUUAAGAUAUUGCAUC............  9         2.1
.................................................................AUUGGUUAAGAUAUUGCAUCG...........  2         0.467
.................................................................AUUGGUUAAGAUAUUGCA..............  2         0.467
.................................................................AUUGGUUAAGAUAUUGCAUCGUUUG.......  1         0.233
..................................................................UUGGUUAAGAUAUUGCAUCGU..........  39        9.09
..................................................................UUGGUUAAGAUAUUGCAUCGUU.........  36        8.39
..................................................................UUGGUUAAGAUAUUGCAUCGUUU........  6         1.4
..................................................................UUGGUUAAGAUAUUGCAUC............  3         0.7
..................................................................UUGGUUAAGAUAUUGCAU.............  1         0.233
...................................................................UGGUUAAGAUAUUGCAUCGU..........  1         0.233
...................................................................UGGUUAAGAUAUUGCAUCGUUU........  1         0.233
....................................................................GGUUAAGAUAUUGCAUCGUU.........  3         0.7
GUCGGGCGACCGGUGAAAUAUUUUGACCAAUUUUAUAUAUCGGUCUGAUCGUUGACUCAAGGUGAAUUGGUUAAGAUAUUGCAUCGUUUGCUCGAUC
(((((((((.(((((.(((((((((((((((((........((((........))))......))))))))))))))))).))))).))))))))). (-40.54)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	10	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	302	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	1	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).