Deep sequencing reads for stem-loop sequence MI0012295

Stem-loop ID

bmo-mir-998

Reads

                                             bmo-miR-998                   Count     RPM (mean number of reads per million)
...........................................UAGCACCAUGGGAUUCAGCUCA........  449       130
...........................................UAGCACCAUGGGAUUCAGCU..........  84        45.3
...........................................UAGCACCAUGGGAUUCAGCUC.........  69        23.6
...........................................UAGCACCAUGGGAUUCAGC...........  11        6.33
...........................................UAGCACCAUGGGAUUCAG............  2         1.09
............................................AGCACCAUGGGAUUCAGCUCA........  4         1.56
............................................AGCACCAUGGGAUUCAGCUC.........  1         0.233
.............................................GCACCAUGGGAUUCAGCUCA........  1         0.861
CUCGGUCGCGAGCUGCCUCCCGUGCGGCUGCAGUGCUCGCGUGUAGCACCAUGGGAUUCAGCUCACGGCCGCU
..((((((.((((((..(((((((..((((((((....)).))))))..)))))))..)))))).)))))).. (-45.50)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	20	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	560	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	112	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).