Deep sequencing reads for stem-loop sequence MI0012199

Stem-loop ID

bmo-mir-2748

Reads

                           bmo-miR-2748                                                         Count     RPM (mean number of reads per million)
UCGGAAACGCGACCCACUGA..........................................................................  9         3.98
UCGGAAACGCGACCCACUGAG.........................................................................  1         0.861
.CGGAAACGCGACCCACUGA..........................................................................  2         1.09
.CGGAAACGCGACCCACUGAGAAGA.....................................................................  1         0.233
....AAACGCGACCCACUGAGAAGA.....................................................................  1         0.233
....AAACGCGACCCACUGAGAAG......................................................................  1         0.861
.....AACGCGACCCACUGAGAAGAU....................................................................  1         0.233
.....AACGCGACCCACUGAGAAGAUCCGGC...............................................................  1         0.861
......ACGCGACCCACUGAGAAGAU....................................................................  4         1.56
......ACGCGACCCACUGAGAAGAUCC..................................................................  1         0.233
.......CGCGACCCACUGAGAAGAU....................................................................  4         2.19
.......CGCGACCCACUGAGAAGAUC...................................................................  2         0.467
.......CGCGACCCACUGAGAAGAUCCG.................................................................  1         0.233
.......CGCGACCCACUGAGAAGAUCCGG................................................................  1         0.233
........GCGACCCACUGAGAAGAUCC..................................................................  3         0.7
........GCGACCCACUGAGAAGAUCCGG................................................................  1         0.861
........GCGACCCACUGAGAAGAUCCG.................................................................  1         0.233
.........CGACCCACUGAGAAGAUCCG.................................................................  9         3.98
.........CGACCCACUGAGAAGAUCCGGC...............................................................  1         0.233
..........GACCCACUGAGAAGAUCCGGCGA.............................................................  2         0.467
..........GACCCACUGAGAAGAUCCGGCG..............................................................  1         0.233
..........GACCCACUGAGAAGAUCCGG................................................................  1         0.233
...........ACCCACUGAGAAGAUCCGGCG..............................................................  3         1.33
............CCCACUGAGAAGAUCCGGCG..............................................................  8         5.62
..............CACUGAGAAGAUCCGGCGAG............................................................  41        13.3
..............CACUGAGAAGAUCCGGCGAGA...........................................................  3         0.7
..............CACUGAGAAGAUCCGGCGAGAA..........................................................  1         0.233
...............ACUGAGAAGAUCCGGCGA.............................................................  1         0.861
.................UGAGAAGAUCCGGCGAGAA..........................................................  2         0.461
....................................AACUCAGUGGGCUGUGUC........................................  1         0.233
UCGGAAACGCGACCCACUGAGAAGAUCCGGCGAGAAAACUCAGUGGGCUGUGUCUAUGGGUUUAACAUCCUCGCCGAGCCCUUCGUCGCAAGCG
........(((((.......((((..((((((((.(((((((.(((((...))))))))))))......))))))).)..)))))))))..... (-30.71)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	14	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	109	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	57	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).