Deep sequencing reads for stem-loop sequence MI0011580

Stem-loop ID dme-mir-2491
Reads
                dme-miR-2491-5p                                                            dme-miR-2491-3p                                         Count     RPM (mean number of reads per million)
.................CGCUGUUGCCUUUGCAGUUGCU.........................................................................................................  18        0.987
.................CGCUGUUGCCUUUGCAGUUG...........................................................................................................  3         0.29
.................CGCUGUUGCCUUUGCAGUUGC..........................................................................................................  1         0.025
..................GCUGUUGCCUUUGCAGUUGC..........................................................................................................  2         1.78
....................UGUUGCCUUUGCAGUUGCUGUU......................................................................................................  1         0.105
.........................................................GCGGCCAAUUGUUGCGCAUC...................................................................  1         1.09
..............................................................................................CAACAACAGCAGCAGCAA................................  1         0.0685
.......................................................................................................CAGCAGCAACUGCAGUAGCAGC...................  1         0.00574
CGCGAACCACUUUGUGCCGCUGUUGCCUUUGCAGUUGCUGUUUUCCAUGUUGCUACUGCGGCCAAUUGUUGCGCAUCAGCAACAUCAACAACAUCAACAACAGCAGCAGCAACUGCAGUAGCAGCACUCGUGAUUCACUUUCGA
...(((.(((...((((.((((((((..((((.(((((((((......(((((....)))))....((((((......))))))..............))))))))).))))..)))))))).))))..))).)))........ (-53.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000010 1head GEO : GSM240749 [ Chung WJ et al.]
ER0000000011 7S2 cell GEO : GSM272651 [ Chung WJ et al.]
ER0000000012 6S2 cell GEO : GSM272652 [ Chung WJ et al.]
ER0000000013 6Kc cell GEO : GSM272653 [ Chung WJ et al.]
ER0000000014 3imaginal disc GEO : GSM275691 [ Chung WJ et al.]
ER0000000015 2head GEO : GSM286601 [ Chung WJ et al.]
ER0000000016 5whole body GEO : GSM286602 [ Chung WJ et al.]
ER0000000017 5whole body GEO : GSM286603 [ Chung WJ et al.]
ER0000000018 19embryo GEO : GSM286604 [ Chung WJ et al.]
ER0000000019 10embryo GEO : GSM286605 [ Chung WJ et al.]
ER0000000020 1embryo GEO : GSM286606 [ Chung WJ et al.]
ER0000000022 4embryo GEO : GSM286611 [ Chung WJ et al.]
ER0000000023 1embryo GEO : GSM286613 [ Chung WJ et al.]
ER0000000079 3whole body GEO : GSM322208 3rd instar larvae
ER0000000080 4whole body GEO : GSM322219 2-4 day old pupae
ER0000000081 1whole body GEO : GSM322245 3rd instar larvae
ER0000000083 3head GEO : GSM322533 adult female head
ER0000000084 16head GEO : GSM322543 adult male head
ER0000000085 8whole body GEO : GSM360256 1st instar larvae
ER0000000086 16whole body GEO : GSM360257 1st instar larvae
ER0000000087 6whole body GEO : GSM360260 0-1 day old pupae
ER0000000088 5whole body GEO : GSM360262 0-2 day old pupae
ER0000000089 2embryo GEO : GSM364902 12-24hr embryo
ER0000000090 5whole body GEO : GSM280082 from 2-4 day old flies
ER0000000091 9whole body GEO : GSM280083 from 2-4 day old flies
ER0000000092 5whole body GEO : GSM280084 from 2-4 day old flies
ER0000000099 3imaginal disc GEO : GSM399105 imaginal disc/brain
ER0000000100 16whole body GEO : GSM399106 female body
ER0000000101 24whole body GEO : GSM399107 male body
ER0000000102 4S2 cell GEO : GSM371638
ER0000000118 1embryo GEO : GSM180331 early embryo (2-6) [ Ruby JG et al.]
ER0000000119 1embryo GEO : GSM180332 mid embryo (6-10) [ Ruby JG et al.]
ER0000000120 1embryo GEO : GSM180333 late embryo (12-24) [ Ruby JG et al.]
ER0000000122 1imaginal disc GEO : GSM180335 [ Ruby JG et al.]
ER0000000127 3ovary GEO : GSM385744 Ovary Somatic Sheet (OSS) cells
ER0000000128 10ovary GEO : GSM385748 Ovary Somatic Sheet (OSS) cells
ER0000000129 13ovary GEO : GSM385821 Ovary Somatic Sheet (OSS) cells
ER0000000130 8ovary GEO : GSM385822 Ovary Somatic Sheet (OSS) cells
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References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).