Deep sequencing reads for stem-loop sequence MI0011577

Stem-loop ID

dme-mir-307b

Reads

                              dme-miR-307b-5p                          dme-miR-307b-3p                                     Count     RPM (mean number of reads per million)
..............................CUCACUCAAGGAGGUUGUGAUG....................................................................  2         0.072
...............................UCACUCAAGGAGGUUGUGAUGG...................................................................  14        0.499
...............................UCACUCAAGGAGGUUGUGAUG....................................................................  2         0.547
........................................................................UCACACCCAGGUUGAGUGAGU...........................  2962      74.7
..........................................................................ACACCCAGGUUGAGUGAGUCA.........................  1         0.0454
UAGUUUCGUGGAUACUCUGUCCUGCUAUCGCUCACUCAAGGAGGUUGUGAUGGAUACCAUAUCGAAAUAACAUCACACCCAGGUUGAGUGAGUCAAAGCAAGACAAAAUGCUGCUAACUU
.((((..(..(......((((.((((.(.((((((((((...((.(((((((..................))))))).))...)))))))))).).)))).)))).....)..).)))). (-39.57)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000010	10	head	GEO : GSM240749		[ Chung WJ et al.]
ER0000000011	3	S2 cell	GEO : GSM272651		[ Chung WJ et al.]
ER0000000012	1	S2 cell	GEO : GSM272652		[ Chung WJ et al.]
ER0000000013	2	Kc cell	GEO : GSM272653		[ Chung WJ et al.]
ER0000000014	9	imaginal disc	GEO : GSM275691		[ Chung WJ et al.]
ER0000000015	110	head	GEO : GSM286601		[ Chung WJ et al.]
ER0000000016	8	whole body	GEO : GSM286602		[ Chung WJ et al.]
ER0000000017	2	whole body	GEO : GSM286603		[ Chung WJ et al.]
ER0000000018	8	embryo	GEO : GSM286604		[ Chung WJ et al.]
ER0000000019	3	embryo	GEO : GSM286605		[ Chung WJ et al.]
ER0000000022	1	embryo	GEO : GSM286611		[ Chung WJ et al.]
ER0000000079	3	whole body	GEO : GSM322208	3rd instar larvae
ER0000000080	12	whole body	GEO : GSM322219	2-4 day old pupae
ER0000000081	4	whole body	GEO : GSM322245	3rd instar larvae
ER0000000082	10	whole body	GEO : GSM322338	2-4 day old pupae
ER0000000083	4	head	GEO : GSM322533	adult female head
ER0000000084	1437	head	GEO : GSM322543	adult male head
ER0000000085	1	whole body	GEO : GSM360256	1st instar larvae
ER0000000087	24	whole body	GEO : GSM360260	0-1 day old pupae
ER0000000088	60	whole body	GEO : GSM360262	0-2 day old pupae
ER0000000089	1	embryo	GEO : GSM364902	12-24hr embryo
ER0000000092	5	whole body	GEO : GSM280084	from 2-4 day old flies
ER0000000093	1	whole body	GEO : GSM280085	from 2-4 day old flies
ER0000000095	1	S2 cell	GEO : GSM280087
ER0000000096	1	S2 cell	GEO : GSM280088
ER0000000099	19	imaginal disc	GEO : GSM399105	imaginal disc/brain
ER0000000100	3	whole body	GEO : GSM399106	female body
ER0000000101	5	whole body	GEO : GSM399107	male body
ER0000000102	4	S2 cell	GEO : GSM371638
ER0000000115	30	head	GEO : GSM180328	adult heads (female heads, male heads)	[ Ruby JG et al.]
ER0000000122	2	imaginal disc	GEO : GSM180335		[ Ruby JG et al.]
ER0000000123	1	whole body	GEO : GSM180336	pupae: 0-1 day, 0-2 day, 2-4 day	[ Ruby JG et al.]
ER0000000124	2	S2 cell	GEO : GSM180337	tissue culture cells (S2 only)	[ Ruby JG et al.]
ER0000000127	182	ovary	GEO : GSM385744	Ovary Somatic Sheet (OSS) cells
ER0000000128	388	ovary	GEO : GSM385748	Ovary Somatic Sheet (OSS) cells
ER0000000129	539	ovary	GEO : GSM385821	Ovary Somatic Sheet (OSS) cells
ER0000000130	155	ovary	GEO : GSM385822	Ovary Somatic Sheet (OSS) cells

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).