Deep sequencing reads for stem-loop sequence MI0010629

Stem-loop ID hsa-mir-2110
Reads 
         hsa-miR-2110                                                        Count     RPM (mean number of reads per million)
......UUUGGGGAAACGGCCGCUGAGUGA.............................................  1         16.7
......UUUGGGGAAACGGCCGCU...................................................  1         35.3
.......UUGGGGAAACGGCCGCUGAGUGA.............................................  127       3.72
.......UUGGGGAAACGGCCGCUGAGUGAG............................................  87        2.06
.......UUGGGGAAACGGCCGCUGAGUG..............................................  28        32.7
.......UUGGGGAAACGGCCGCUGAGU...............................................  16        0.707
.......UUGGGGAAACGGCCGCUGA.................................................  2         0.107
...............................................UCACCGCGGUCUUUUCCUCCCA......  2         0.362
................................................CACCGCGGUCUUUUCCUCCCA......  1         0.181
................................................CACCGCGGUCUUUUCCUCCCAC.....  1         0.181
................................................CACCGCGGUCUUUUCCUCCCACU....  1         0.181
CAGGGGUUUGGGGAAACGGCCGCUGAGUGAGGCGUCGGCUGUGUUUCUCACCGCGGUCUUUUCCUCCCACUCUUG
(((((((..(((((((.((((((((((.((.(((.....))).)).))))..)))))).)))))))..))))))) (-34.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 5embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 4embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 40melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 7melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 12 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000106 6melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 6melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 41melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 11melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 107melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 21melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 10melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 22melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 30melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000140 2squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000156 2squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000158 1squamous cell GEO : GSM532894 [ Witten D et al.]
ER0000000160 19squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000164 6squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000172 1squamous cell GEO : GSM532908 [ Witten D et al.]
ER0000000174 3squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000178 1squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 1squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000184 1squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000188 1squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000264 3 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000265 1 GEO : GSM368182 tissue: clinically negative of NPC [ Zhu JY et al.]
ER0000000266 1 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000267 2 GEO : GSM368184 tissue: clinically negative of NPC [ Zhu JY et al.]
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References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).