Deep sequencing reads for stem-loop sequence MI0010585

Stem-loop ID tca-mir-970
Reads
                 tca-miR-970-5p                        tca-miR-970-3p                        Count     RPM (mean number of reads per million)
................AGCUCAGCGUGUGUCGUACUGAUA...................................................  10        9.53
................AGCUCAGCGUGUGUCGUACUG......................................................  6         9.02
................AGCUCAGCGUGUGUCGUA.........................................................  6         0.774
................AGCUCAGCGUGUGUCGUACUGAU....................................................  4         0.516
................AGCUCAGCGUGUGUCGUACUGAUAG..................................................  4         0.516
................AGCUCAGCGUGUGUCGUACUGA.....................................................  4         0.516
...................UCAGCGUGUGUCGUACUGAUA...................................................  2         0.258
................................................ACUAGCUAUCAUAAGACACACGCG...................  4         0.516
......................................................UAUCAUAAGACACACGCGGCUAUCGC...........  22        2.84
......................................................UAUCAUAAGACACACGCGGCUAU..............  6         0.774
......................................................UAUCAUAAGACACACGCGGC.................  6         0.774
......................................................UAUCAUAAGACACACGCG...................  4         0.516
......................................................UAUCAUAAGACACACGCGGCUA...............  2         0.258
......................................................UAUCAUAAGACACACGCGGCU................  2         0.258
.......................................................AUCAUAAGACACACGCGGCUAUCGCC..........  220       28.4
.......................................................AUCAUAAGACACACGCGGC.................  34        4.38
.......................................................AUCAUAAGACACACGCGGCUA...............  10        1.29
.......................................................AUCAUAAGACACACGCGG..................  8         1.03
.......................................................AUCAUAAGACACACGCGGCUAU..............  6         0.774
.......................................................AUCAUAAGACACACGCGGCU................  6         0.774
.......................................................AUCAUAAGACACACGCGGCUAUCGC...........  4         0.516
........................................................UCAUAAGACACACGCGGCUAUCGCC..........  4612      644
........................................................UCAUAAGACACACGCGGC.................  722       110
........................................................UCAUAAGACACACGCGGCUAU..............  502       73
........................................................UCAUAAGACACACGCGGCUA...............  266       50.8
........................................................UCAUAAGACACACGCGGCU................  196       50
........................................................UCAUAAGACACACGCGGCUAUCGC...........  50        22.9
........................................................UCAUAAGACACACGCGGCUAUC.............  40        5.16
........................................................UCAUAAGACACACGCGGCUAUCG............  6         0.774
.........................................................CAUAAGACACACGCGGCUAUCGCC..........  970       133
.........................................................CAUAAGACACACGCGGCUAU..............  90        11.6
.........................................................CAUAAGACACACGCGGCUA...............  42        5.42
.........................................................CAUAAGACACACGCGGCU................  36        4.64
.........................................................CAUAAGACACACGCGGCUAUCGC...........  18        2.32
.........................................................CAUAAGACACACGCGGCUAUC.............  4         8.76
.........................................................CAUAAGACACACGCGGCUAUCG............  4         0.516
..........................................................AUAAGACACACGCGGCUAUCGCC..........  28        3.61
..........................................................AUAAGACACACGCGGCUAU..............  10        1.29
..........................................................AUAAGACACACGCGGCUA...............  2         0.258
............................................................AAGACACACGCGGCUAUCGCC..........  6         0.774
...............................................................ACACACGCGGCUAUCGCC..........  4         0.516
AAACGAUGCCGGCGGCAGCUCAGCGUGUGUCGUACUGAUAGUGUUAUCACUAGCUAUCAUAAGACACACGCGGCUAUCGCCGGUCUCUCCU
....((.(((((((..((((..(((((((((....(((((((..........)))))))...)))))))))))))..))))))).)).... (-46.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 15326adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 88embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).