Deep sequencing reads for stem-loop sequence MI0008907

Stem-loop ID tca-mir-71
Reads
          tca-miR-71-5p                            tca-miR-71-3p                  Count     RPM (mean number of reads per million)
.........UGAAAGACAUGGGUAGUGAGAU................................................  2668      361
.........UGAAAGACAUGGGUAGUGAG..................................................  2124      818
.........UGAAAGACAUGGGUAGUGAGA.................................................  1188      186
.........UGAAAGACAUGGGUAGUGAGAUG...............................................  1182      177
.........UGAAAGACAUGGGUAGUG....................................................  706       124
.........UGAAAGACAUGGGUAGUGA...................................................  460       158
.........UGAAAGACAUGGGUAGUGAGAUGU..............................................  164       21.2
.........UGAAAGACAUGGGUAGUGAGAUGUU.............................................  22        2.84
.........UGAAAGACAUGGGUAGUGAGAUGUUU............................................  4         0.516
..........GAAAGACAUGGGUAGUGAGAU................................................  350       61.6
..........GAAAGACAUGGGUAGUGAG..................................................  294       62.6
..........GAAAGACAUGGGUAGUGAGAUG...............................................  184       23.7
..........GAAAGACAUGGGUAGUGAGA.................................................  170       21.9
..........GAAAGACAUGGGUAGUGA...................................................  72        9.29
..........GAAAGACAUGGGUAGUGAGAUGU..............................................  24        3.1
..........GAAAGACAUGGGUAGUGAGAUGUU.............................................  2         0.258
...........AAAGACAUGGGUAGUGAGAUG...............................................  152       19.6
...........AAAGACAUGGGUAGUGAGA.................................................  94        12.1
...........AAAGACAUGGGUAGUGAGAU................................................  56        7.22
...........AAAGACAUGGGUAGUGAGAUGU..............................................  56        7.22
...........AAAGACAUGGGUAGUGAG..................................................  50        6.45
...........AAAGACAUGGGUAGUGAGAUGUU.............................................  4         0.516
...........AAAGACAUGGGUAGUGAGAUGUUU............................................  2         0.258
............AAGACAUGGGUAGUGAGA.................................................  4         0.516
............AAGACAUGGGUAGUGAGAU................................................  2         0.258
............AAGACAUGGGUAGUGAGAUGU..............................................  2         0.258
.............AGACAUGGGUAGUGAGAUG...............................................  4         0.516
.............AGACAUGGGUAGUGAGAU................................................  4         0.516
.............AGACAUGGGUAGUGAGAUGU..............................................  2         0.258
................................................UGUCUCACUACCUUGUCUUUC..........  2         0.258
.................................................GUCUCACUACCUUGUCUUUCA.........  2         0.258
..................................................UCUCACUACCUUGUCUUUCAUG.......  3012      685
..................................................UCUCACUACCUUGUCUUUCA.........  1080      238
..................................................UCUCACUACCUUGUCUUUC..........  922       234
..................................................UCUCACUACCUUGUCUUUCAU........  748       303
..................................................UCUCACUACCUUGUCUUU...........  710       174
..................................................UCUCACUACCUUGUCUUUCAUGU......  218       69.3
..................................................UCUCACUACCUUGUCUUUCAUGUA.....  108       13.9
..................................................UCUCACUACCUUGUCUUUCAUGUAG....  6         0.774
..................................................UCUCACUACCUUGUCUUUCAUGUAGC...  2         0.258
...................................................CUCACUACCUUGUCUUUCAUG.......  348       53.1
...................................................CUCACUACCUUGUCUUUCA.........  122       40.5
...................................................CUCACUACCUUGUCUUUC..........  116       56.2
...................................................CUCACUACCUUGUCUUUCAU........  64        8.25
...................................................CUCACUACCUUGUCUUUCAUGU......  26        3.35
...................................................CUCACUACCUUGUCUUUCAUGUA.....  16        2.06
....................................................UCACUACCUUGUCUUUCAUG.......  20        2.58
....................................................UCACUACCUUGUCUUUCAU........  6         9.02
....................................................UCACUACCUUGUCUUUCA.........  6         0.774
....................................................UCACUACCUUGUCUUUCAUGUA.....  4         0.516
....................................................UCACUACCUUGUCUUUCAUGU......  2         0.258
.......................................................CUACCUUGUCUUUCAUGU......  2         0.258
GUCUCUUCUUGAAAGACAUGGGUAGUGAGAUGUUUAAUUAAUAAAUUUUGUCUCACUACCUUGUCUUUCAUGUAGCGAU
(((.((...(((((((((.(((((((((((((((((.....)))))...)))))))))))))))))))))...)).))) (-33.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 34614adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 872embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).