miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0008242
Stem-loop ID	osa-MIR1846a
Reads	osa-miR1846a-5p osa-miR1846a-3p Count RPM (mean number of reads per million) ................................AGUGAGGAGGCCGGGGCCGCU........................................................... 1 11.8 ...................................GAGGAGGCCGGGGCCGCUGG......................................................... 20 4.71 .......................................................AUCCGGUGACCCCGUUCUCCUCGCCG............................... 1 11.8 .........................................................CCGGUGACCCCGUUCUCCUCGCCGG.............................. 1 11.8 .........................................................CCGGUGACCCCGUUCUCCUCGCCG............................... 1 11.8 .........................................................CCGGUGACCCCGUUCUCCUCGC................................. 1 11.8 ..........................................................CGGUGACCCCGUUCUCCU.................................... 1 15 CCGCUCCCUACCAAUGAGCCGCCGGAUCUCCCAGUGAGGAGGCCGGGGCCGCUGGAUCCGGUGACCCCGUUCUCCUCGCCGGCGGAUCCGGCGCUCCAGAGAAAGGAACGAG .((.(((........((((.(((((((((.((.((((((((..(((((.(((((....))))).)))))..)))))))).)).)))))))))))))........))).)).. (-68.39)

                              osa-miR1846a-5p              osa-miR1846a-3p                                        Count     RPM (mean number of reads per million)
................................AGUGAGGAGGCCGGGGCCGCU...........................................................  1         11.8
...................................GAGGAGGCCGGGGCCGCUGG.........................................................  20        4.71
.......................................................AUCCGGUGACCCCGUUCUCCUCGCCG...............................  1         11.8
.........................................................CCGGUGACCCCGUUCUCCUCGCCGG..............................  1         11.8
.........................................................CCGGUGACCCCGUUCUCCUCGCCG...............................  1         11.8
.........................................................CCGGUGACCCCGUUCUCCUCGC.................................  1         11.8
..........................................................CGGUGACCCCGUUCUCCU....................................  1         15
CCGCUCCCUACCAAUGAGCCGCCGGAUCUCCCAGUGAGGAGGCCGGGGCCGCUGGAUCCGGUGACCCCGUUCUCCUCGCCGGCGGAUCCGGCGCUCCAGAGAAAGGAACGAG
.((.(((........((((.(((((((((.((.((((((((..(((((.(((((....))))).)))))..)))))))).)).)))))))))))))........))).)).. (-68.39)

Accession

Read count

Tissue

Link

Comment

Reference

GEO : GSM407071

GEO : GSM407072

GEO : GSM571077

strain: indica 93-11, age: 12-day-old, stress: control

[ Li T et al.]

ER0000000202

whole body

GEO : GSM571078

strain: indica 93-11, stress: H2O2

[ Li T et al.]

miRBase

Deep sequencing reads for stem-loop sequence MI0008242

Filter reads

References

References
1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).