Deep sequencing reads for stem-loop sequence MI0006977

Stem-loop ID

osa-MIR444e

Reads

                                                                                                    osa-miR444e                              Count     RPM (mean number of reads per million)
........AACCAGGGGCAAUAAGCUA.................................................................................................................  19        4.48
..............................................UUGCGAGAAACUUGUUGGAUGAU.......................................................................  23        5.53
..........................................................................................GCAAGUUAUGCAGUUGCUGCCUCA..........................  5         75
...........................................................................................CAAGUUAUGCAGUUGCUGCCU............................  113       989
...........................................................................................CAAGUUAUGCAGUUGCUGCCUC...........................  49        76
...........................................................................................CAAGUUAUGCAGUUGCUGCC.............................  40        9.52
............................................................................................AAGUUAUGCAGUUGCUGCCU............................  40        9.52
............................................................................................AAGUUAUGCAGUUGCUGCCUC...........................  1         11.8
.............................................................................................AGUUAUGCAGUUGCUGCCUCAAGC.......................  24        5.77
.............................................................................................AGUUAUGCAGUUGCUGCCUCA..........................  21        5.05
.............................................................................................AGUUAUGCAGUUGCUGCCU............................  19        4.57
..............................................................................................GUUAUGCAGUUGCUGCCU............................  1         11.8
...............................................................................................UUAUGCAGUUGCUGCCUCAAGC.......................  44        10.5
...............................................................................................UUAUGCAGUUGCUGCCUCAA.........................  20        4.81
...............................................................................................UUAUGCAGUUGCUGCCUCAAG........................  1         15
................................................................................................UAUGCAGUUGCUGCCUCAAGC.......................  21        5.05
.................................................................................................AUGCAGUUGCUGCCUCAAGCUU.....................  23        17
.................................................................................................AUGCAGUUGCUGCCUCAAGC.......................  20        4.81
..................................................................................................UGCAGUUGCUGCCUCAAGCUU.....................  58        212
..................................................................................................UGCAGUUGCUGCCUCAAGCU......................  40        9.52
..................................................................................................UGCAGUUGCUGCCUCAAGC.......................  38        9.04
..................................................................................................UGCAGUUGCUGCCUCAAGCUUA....................  22        5.18
...................................................................................................GCAGUUGCUGCCUCAAGCUU.....................  40        9.52
...................................................................................................GCAGUUGCUGCCUCAAGC.......................  18        4.24
........................................................................................................UGCUGCCUCAAGCUUACUGCC...............  42        9.99
..........................................................................................................CUGCCUCAAGCUUACUGCC...............  19        4.48
GGUUUUGUAACCAGGGGCAAUAAGCUAGAGGCACCAACUGCAUAACUUGCGAGAAACUUGUUGGAUGAUGAUCUUGCCAAUGAUUUUGCCGCAAGUUAUGCAGUUGCUGCCUCAAGCUUACUGCCUUUGUUUGCUAAACC
(((((.((((.((((((((.((((((.((((((.(((((((((((((((((.((((.(..((((..(.....)...))))..)))))..))))))))))))))))).)))))).)))))).)))))))).)))).))))) (-77.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000008	58	whole body	GEO : GSM407071		[ Johnson C et al.]
ER0000000009	50	whole body	GEO : GSM407072		[ Johnson C et al.]
ER0000000201	1442	whole body	GEO : GSM571077	strain: indica 93-11, age: 12-day-old, stress: control	[ Li T et al.]
ER0000000202	1906	whole body	GEO : GSM571078	strain: indica 93-11, stress: H2O2	[ Li T et al.]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).