Deep sequencing reads for stem-loop sequence MI0006416

Stem-loop ID

hsa-mir-1276

Reads

            hsa-miR-1276                                                             Count     RPM (mean number of reads per million)
...........UAAAGAGCCCUGUGGAGACA....................................................  82        5.88
...........UAAAGAGCCCUGUGGAGACACC..................................................  43        2.44
...........UAAAGAGCCCUGUGGAGACAC...................................................  9         0.568
CCCCAGCUAGGUAAAGAGCCCUGUGGAGACACCUGGAUUCAGAGAACAUGUCUCCACUGAGCACUUGGGCCUUGAUGGCGGCU
(((((...((((.(((.((.(.(((((((((((((....))).)....))))))))).).)).)))..))))...))).)).. (-32.30)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000103	5	melanoblast	GEO : GSM458535		[ Stark MS et al.]
ER0000000106	5	melanoma	GEO : GSM458538	cell line: secondary acral melanoma	[ Stark MS et al.]
ER0000000107	19	melanoma	GEO : GSM458539	cell line: secondary mucosal melanoma	[ Stark MS et al.]
ER0000000108	20	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000109	17	melanoma	GEO : GSM458541	cell line: primary uveal melanoma	[ Stark MS et al.]
ER0000000110	3	melanoma	GEO : GSM458542	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000111	17	melanoma	GEO : GSM458543	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000112	13	melanoma	GEO : GSM458544	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000113	15	melanoma	GEO : GSM458545	cell line: secondary cutaneous melanoma from a chronically sun-damaged body site	[ Stark MS et al.]
ER0000000114	22	melanoma	GEO : GSM458546	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000150	1	squamous cell	GEO : GSM532886		[ Witten D et al.]
ER0000000155	1		GEO : GSM532891	normal cervix	[ Witten D et al.]
ER0000000156	1	squamous cell	GEO : GSM532892		[ Witten D et al.]

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).