Deep sequencing reads for stem-loop sequence MI0006388

Stem-loop ID hsa-mir-1254-1
Reads 
                    hsa-miR-1254                                                                   Count     RPM (mean number of reads per million)
...GGGAGGAUUGCUUGAGCC............................................................................  1         2.04
................GAGCCUGGAAGCUGGAGCCUGCAGU........................................................  39        0.846
................GAGCCUGGAAGCUGGAGCCUGCAG.........................................................  13        0.411
................GAGCCUGGAAGCUGGAGCCUGCAGUG.......................................................  7         0.132
................GAGCCUGGAAGCUGGAGCCUGCA..........................................................  6         0.388
.................AGCCUGGAAGCUGGAGCCUGCAGU........................................................  62        1.64
.................AGCCUGGAAGCUGGAGCCUGCAG.........................................................  26        0.734
.................AGCCUGGAAGCUGGAGCCUGCAGUGA......................................................  22        0.589
.................AGCCUGGAAGCUGGAGCCUGCAGUG.......................................................  21        0.713
.................AGCCUGGAAGCUGGAGCCUGCA..........................................................  6         0.236
GGUGGGAGGAUUGCUUGAGCCUGGAAGCUGGAGCCUGCAGUGAACUAUCAUUGUGCCACUGUACUCCAGCCUAGGCAACAAAAUGAAAUCCUGUCUA
...((.((((((..(((.((((((..(((((((..(((((((.((.......))..))))))))))))))))))))..))).....)))))).)).. (-39.50)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000103 92melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 7melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 18 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000106 9melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 5melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 34melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 24melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 44melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 7melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 20melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 11melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 12melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000140 6squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000150 1squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000154 1squamous cell GEO : GSM532890 [ Witten D et al.]
ER0000000156 2squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000157 2 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000160 1squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000174 2squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000178 2squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000184 4squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000186 2squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000266 2 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
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References

1
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).