Deep sequencing reads for stem-loop sequence MI0006383

Stem-loop ID hsa-mir-1248
Reads 
       hsa-miR-1248                                                                                        Count     RPM (mean number of reads per million)
...ACCUUCUUGUAUAAGCA......................................................................................  8         0.704
...ACCUUCUUGUAUAAGCACUGUGCUAAAA...........................................................................  4         0.306
...ACCUUCUUGUAUAAGCACUGUGC................................................................................  3         0.206
...ACCUUCUUGUAUAAGCACUGUGCUAAAAU..........................................................................  2         0.168
...ACCUUCUUGUAUAAGCACUGU..................................................................................  2         0.137
...........................AAAAUUGCAGACACUAGGACC..........................................................  2         17.3
............................AAAUUGCAGACACUAGGACC..........................................................  3         26.6
UUUACCUUCUUGUAUAAGCACUGUGCUAAAAUUGCAGACACUAGGACCAUGUCUUGGUUUUUGCAAUAAUGCUAGCAGAGUACACACAAGAAGAAAAGUAACAGCA
.....((((((((....(.(((.(((((..((((((((.((((((((...)))))))).)))))))).....))))).))).)..))))))))............. (-34.50)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000108 10melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 2melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 4melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 3melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000159 1 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000172 1squamous cell GEO : GSM532908 [ Witten D et al.]
ER0000000177 4 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000185 2 GEO : GSM532921 normal cervix [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).