Deep sequencing reads for stem-loop sequence MI0006350

Stem-loop ID hsa-mir-1289-1
Reads 
                                                                                       hsa-miR-1289                                              Count     RPM (mean number of reads per million)
..................................................................................GGGUGGAGUCCAGGAAUCUG..........................................  1         21.8
.....................................................................................UGGAGUCCAGGAAUCUGCAUUUU....................................  2         0.0761
UUCUCAAUUUUUAGUAGGAAUUAAAAACAAAACUGGUAAAUGCAGACUCUUGGUUUCCACCCCCAGAGAAUCCCUAAACCGGGGGUGGAGUCCAGGAAUCUGCAUUUUAGAAAGUACCCAGGGUGAUUCUGAUAAUUGGGAACA
(((((((((.......(((((((........(((...(((((((((.((((((.((((((((((..((.....)).....)))))))))).)))))).))))))))).....)))........)))))))...))))))))).. (-55.89)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000103 2melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000140 1squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000150 1squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000156 1squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000163 1 GEO : GSM532899 normal cervix [ Witten D et al.]
ER0000000167 1 GEO : GSM532903 normal cervix [ Witten D et al.]
ER0000000177 1 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000264 1 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).