Deep sequencing reads for stem-loop sequence MI0006344

Stem-loop ID hsa-mir-548e
Reads 
                                                      hsa-miR-548e                        Count     RPM (mean number of reads per million)
...............AAAAGCAAUCGCGGUUUUUG.....................................................  2         0.0815
...................................................CAAAAACUGAGACUACUUUUGCA..............  2         0.0761
....................................................AAAAACUGAGACUACUUUUGCA..............  236       8.18
....................................................AAAAACUGAGACUACUUUUGC...............  21        0.574
....................................................AAAAACUGAGACUACUUUUG................  18        0.952
......................................................AAACUGAGACUACUUUUGCACCA...........  2         0.0725
UUAUUAGGUUGGUACAAAAGCAAUCGCGGUUUUUGCUAUUACUUUUAAAGGCAAAAACUGAGACUACUUUUGCACCAACCUGAUAGAA
(((((((((((((.((((((...((.(((((((((((.(((....))).))))))))))).))...)))))).))))))))))))).. (-39.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000103 70melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 14melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 44 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000106 17melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 26melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 21melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 51melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 18melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 16melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 12melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 11melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 13melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000138 1squamous cell GEO : GSM532874 [ Witten D et al.]
ER0000000156 2squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000160 2squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000164 2squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000174 2squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000178 2squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 1squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000186 1squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000188 2squamous cell GEO : GSM532924 [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).